Gene annotation
Transcriptome id Sobic.009G237600.1
Synonym GBF3, Sb09g028990
Functional annotation transcription factor, putative, expressed
UniProt C5YVZ3
Pfam PF16596 PF00170 PF07777
Panther DB PTHR22952 PTHR22952:SF156
NCBI CDD -
KEGG Orthology K09060; plant G-box-binding factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G46270 : G-box binding factor 3
RAP-DB (Rice) LOC_Os05g49420.1 : transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a044635
Brachypodium KQK04786 , KQK04787 , KQK04788
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G237600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
2 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
3 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.010G228600 LSM domain containing protein, expressed -
5 Sobic.009G011700 protein kinase APK1A, chloroplast precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
6 Sobic.009G157900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
8 Sobic.007G002200 glycine-rich RNA-binding protein 7, putative, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
9 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
10 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
11 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
12 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
13 Sobic.003G379700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Increased expression in phyB-1 mutant(PubMedID : 26893475)@No apical meristem protein, putative, expressed -
14 Sobic.008G142700 expressed protein -
15 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.008G180900 YIF1B, putative, expressed -
17 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
18 Sobic.009G152200 OsFBT7 - F-box and tubby domain containing protein, expressed -
19 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6


Gene co-expression network
sample Sobic009G237600 Sobic009G237600 Sobic001G478300 Sobic001G478300 Sobic009G237600--Sobic001G478300 Sobic001G076000 Sobic001G076000 Sobic009G237600--Sobic001G076000 Sobic001G427800 Sobic001G427800 Sobic009G237600--Sobic001G427800 Sobic010G228600 Sobic010G228600 Sobic009G237600--Sobic010G228600 Sobic009G011700 Sobic009G011700 Sobic009G237600--Sobic009G011700 Sobic009G157900 Sobic009G157900 Sobic009G237600--Sobic009G157900 Sobic001G149700 Sobic001G149700 Sobic009G237600--Sobic001G149700 Sobic007G002200 Sobic007G002200 Sobic009G237600--Sobic007G002200 Sobic010G071200 Sobic010G071200 Sobic009G237600--Sobic010G071200 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic001G076000--Sobic001G149700 Sobic001G076000--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic001G076000--Sobic008G142700 Sobic003G379700 Sobic003G379700 Sobic001G076000--Sobic003G379700 Sobic001G076000--Sobic001G427800 Sobic001G441600 Sobic001G441600 Sobic001G076000--Sobic001G441600 Sobic001G076000--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic001G076000--Sobic006G257900 Sobic003G116700 Sobic003G116700 Sobic001G076000--Sobic003G116700 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G371300 Sobic001G371300 Sobic001G427800--Sobic001G371300 Sobic002G291300 Sobic002G291300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic009G036900 Sobic009G036900 Sobic010G228600--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic010G228600--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic010G228600--Sobic001G056700 Sobic001G471900 Sobic001G471900 Sobic010G228600--Sobic001G471900 Sobic010G144400 Sobic010G144400 Sobic010G228600--Sobic010G144400 Sobic010G228600--Sobic010G071200 Sobic009G034400 Sobic009G034400 Sobic010G228600--Sobic009G034400 Sobic010G228600--Sobic001G149700 Sobic004G164500 Sobic004G164500 Sobic010G228600--Sobic004G164500 Sobic009G011700--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic009G011700--Sobic008G180900 Sobic009G011700--Sobic001G076000 Sobic009G011700--Sobic001G427800 Sobic009G011700--Sobic004G231400 Sobic004G049100 Sobic004G049100 Sobic009G011700--Sobic004G049100 Sobic009G011700--Sobic001G371300 Sobic009G011700--Sobic009G237600 Sobic009G011700--Sobic010G071200 Sobic004G203100 Sobic004G203100 Sobic009G157900--Sobic004G203100 Sobic009G157900--Sobic010G144400 Sobic009G157900--Sobic009G237600 Sobic001G230900 Sobic001G230900 Sobic009G157900--Sobic001G230900 Sobic002G236200 Sobic002G236200 Sobic009G157900--Sobic002G236200 Sobic009G157900--Sobic001G478300 Sobic009G157900--Sobic001G427800 Sobic010G238700 Sobic010G238700 Sobic009G157900--Sobic010G238700 Sobic010G042900 Sobic010G042900 Sobic009G157900--Sobic010G042900 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic009G054700 Sobic009G054700 Sobic007G002200--Sobic009G054700 Sobic004G320000 Sobic004G320000 Sobic007G002200--Sobic004G320000 Sobic007G154701 Sobic007G154701 Sobic007G002200--Sobic007G154701 Sobic001G031200 Sobic001G031200 Sobic007G002200--Sobic001G031200 Sobic004G297400 Sobic004G297400 Sobic007G002200--Sobic004G297400 Sobic004G034400 Sobic004G034400 Sobic007G002200--Sobic004G034400 Sobic007G002200--Sobic009G237600 Sobic009G030100 Sobic009G030100 Sobic007G002200--Sobic009G030100 Sobic007G002200--Sobic001G149700 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600
Octagon: transcription factors


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