Gene annotation
Transcriptome id Sobic.009G011700.1
Synonym APK1, APK1A, Sb09g001190
Functional annotation protein kinase APK1A, chloroplast precursor, putative, expressed
UniProt C5YYH3
Pfam PF00069
Panther DB PTHR27001 PTHR27001:SF191
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology K04733; interleukin-1 receptor-associated kinase 4
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G07570 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os05g02020.1 : protein kinase APK1A, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a038264
Brachypodium KQK08010
Barley HORVU6Hr1G009900.9 , HORVU4Hr1G059750.8 , HORVU4Hr1G059750.4 , HORVU4Hr1G059750.5 , HORVU4Hr1G059750.6 , HORVU4Hr1G059750.7 , HORVU4Hr1G059750.1 , HORVU4Hr1G059750.2 , HORVU4Hr1G059750.3
Wheat TraesCS1A02G031200 , TraesCS1D02G032600 , TraesCS1B02G038800
Populus -


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cDNA sequences
Sobic.009G011700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
2 Sobic.008G180900 YIF1B, putative, expressed -
3 Sobic.001G076000 PHLOEM 2-LIKE A10, putative, expressed -
4 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
5 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
6 Sobic.004G049100 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
8 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
9 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
10 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
11 Sobic.009G171700 SAG20, putative, expressed -
12 Sobic.001G290200 leucine rich repeat containing protein, expressed -
13 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
14 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
16 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
18 Sobic.003G379700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Increased expression in phyB-1 mutant(PubMedID : 26893475)@No apical meristem protein, putative, expressed -
19 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
20 Sobic.001G225100 expressed protein -


Gene co-expression network
sample Sobic009G011700 Sobic009G011700 Sobic001G478300 Sobic001G478300 Sobic009G011700--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic009G011700--Sobic008G180900 Sobic001G076000 Sobic001G076000 Sobic009G011700--Sobic001G076000 Sobic001G427800 Sobic001G427800 Sobic009G011700--Sobic001G427800 Sobic004G231400 Sobic004G231400 Sobic009G011700--Sobic004G231400 Sobic004G049100 Sobic004G049100 Sobic009G011700--Sobic004G049100 Sobic001G371300 Sobic001G371300 Sobic009G011700--Sobic001G371300 Sobic009G237600 Sobic009G237600 Sobic009G011700--Sobic009G237600 Sobic010G071200 Sobic010G071200 Sobic009G011700--Sobic010G071200 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G149700 Sobic001G149700 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic009G246950 Sobic009G246950 Sobic008G180900--Sobic009G246950 Sobic010G168600 Sobic010G168600 Sobic008G180900--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic008G180900--Sobic009G171700 Sobic009G193400 Sobic009G193400 Sobic008G180900--Sobic009G193400 Sobic002G352700 Sobic002G352700 Sobic008G180900--Sobic002G352700 Sobic008G180900--Sobic001G478300 Sobic002G256300 Sobic002G256300 Sobic008G180900--Sobic002G256300 Sobic010G083700 Sobic010G083700 Sobic008G180900--Sobic010G083700 Sobic004G203100 Sobic004G203100 Sobic008G180900--Sobic004G203100 Sobic001G076000--Sobic001G149700 Sobic001G076000--Sobic001G478300 Sobic008G142700 Sobic008G142700 Sobic001G076000--Sobic008G142700 Sobic003G379700 Sobic003G379700 Sobic001G076000--Sobic003G379700 Sobic001G076000--Sobic001G427800 Sobic001G441600 Sobic001G441600 Sobic001G076000--Sobic001G441600 Sobic001G076000--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic001G076000--Sobic006G257900 Sobic003G116700 Sobic003G116700 Sobic001G076000--Sobic003G116700 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G427800--Sobic001G371300 Sobic002G291300 Sobic002G291300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic004G231400--Sobic006G209500 Sobic002G262600 Sobic002G262600 Sobic004G049100--Sobic002G262600 Sobic004G049100--Sobic004G231400 Sobic004G049100--Sobic001G478300 Sobic004G049100--Sobic009G011700 Sobic001G333200 Sobic001G333200 Sobic004G049100--Sobic001G333200 Sobic004G049100--Sobic010G055500 Sobic004G049100--Sobic001G371300 Sobic004G049100--Sobic010G071200 Sobic001G451000 Sobic001G451000 Sobic004G049100--Sobic001G451000 Sobic001G371300--Sobic003G273100 Sobic001G371300--Sobic002G291300 Sobic001G371300--Sobic001G478300 Sobic001G371300--Sobic004G274700 Sobic001G371300--Sobic001G427800 Sobic004G079100 Sobic004G079100 Sobic001G371300--Sobic004G079100 Sobic001G371300--Sobic010G083700 Sobic001G056700 Sobic001G056700 Sobic001G371300--Sobic001G056700 Sobic001G371300--Sobic001G149700 Sobic009G237600--Sobic001G478300 Sobic009G237600--Sobic001G076000 Sobic009G237600--Sobic001G427800 Sobic010G228600 Sobic010G228600 Sobic009G237600--Sobic010G228600 Sobic009G237600--Sobic009G011700 Sobic009G157900 Sobic009G157900 Sobic009G237600--Sobic009G157900 Sobic009G237600--Sobic001G149700 Sobic007G002200 Sobic007G002200 Sobic009G237600--Sobic007G002200 Sobic009G237600--Sobic010G071200 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600
Octagon: transcription factors


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