Gene annotation
Transcriptome id Sobic.001G290200.2,Sobic.001G290200.1
Synonym Sb01g028430, PIRL4
Functional annotation leucine rich repeat containing protein, expressed
UniProt C5WRD0
Pfam PF13855
Panther DB PTHR23155 PTHR23155:SF511
NCBI CDD KOG0617; Ras suppressor protein (contains leucine-rich repeats)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G35470 : plant intracellular ras group-related LRR 4
RAP-DB (Rice) LOC_Os10g42190.1,LOC_Os10g42190.2 : leucine rich repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a051842 , Zm00025a003489
Brachypodium KQJ97891
Barley HORVU1Hr1G049900.1 , HORVU1Hr1G049900.2
Wheat TraesCS1A02G190500 , TraesCS1B02G205800 , TraesCS1B02G205800 , TraesCS1D02G194700
Populus -


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cDNA sequences
Sobic.001G290200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G137800 expressed protein -
2 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
3 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
4 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
5 Sobic.008G025900 expressed protein -
6 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
7 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
8 Sobic.003G081100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsWAK2 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
9 Sobic.005G167300 BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
10 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
11 Sobic.004G153600 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
12 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
13 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
14 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
15 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
16 Sobic.006G109300 protein binding protein, putative, expressed -
17 Sobic.009G157500 MYB family transcription factor, putative, expressed -
18 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
19 Sobic.003G305400 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
20 Sobic.009G011700 protein kinase APK1A, chloroplast precursor, putative, expressed K04733: interleukin-1 receptor-associated kinase 4


Gene co-expression network
sample Sobic001G290200 Sobic001G290200 Sobic009G137800 Sobic009G137800 Sobic001G290200--Sobic009G137800 Sobic003G119800 Sobic003G119800 Sobic001G290200--Sobic003G119800 Sobic005G046100 Sobic005G046100 Sobic001G290200--Sobic005G046100 Sobic001G351700 Sobic001G351700 Sobic001G290200--Sobic001G351700 Sobic008G025900 Sobic008G025900 Sobic001G290200--Sobic008G025900 Sobic010G260500 Sobic010G260500 Sobic001G290200--Sobic010G260500 Sobic002G324200 Sobic002G324200 Sobic001G290200--Sobic002G324200 Sobic003G081100 Sobic003G081100 Sobic001G290200--Sobic003G081100 Sobic005G167300 Sobic005G167300 Sobic001G290200--Sobic005G167300 Sobic004G153600 Sobic004G153600 Sobic009G137800--Sobic004G153600 Sobic008G189400 Sobic008G189400 Sobic009G137800--Sobic008G189400 Sobic004G267300 Sobic004G267300 Sobic009G137800--Sobic004G267300 Sobic003G185200 Sobic003G185200 Sobic009G137800--Sobic003G185200 Sobic009G137800--Sobic008G025900 Sobic001G424700 Sobic001G424700 Sobic009G137800--Sobic001G424700 Sobic009G087800 Sobic009G087800 Sobic009G137800--Sobic009G087800 Sobic001G022100 Sobic001G022100 Sobic009G137800--Sobic001G022100 Sobic009G137800--Sobic010G260500 Sobic009G134600 Sobic009G134600 Sobic003G119800--Sobic009G134600 Sobic003G119800--Sobic008G189400 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic004G031600 Sobic004G031600 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic005G046100--Sobic005G167300 Sobic004G150400 Sobic004G150400 Sobic005G046100--Sobic004G150400 Sobic001G420700 Sobic001G420700 Sobic005G046100--Sobic001G420700 Sobic006G109300 Sobic006G109300 Sobic005G046100--Sobic006G109300 Sobic004G198000 Sobic004G198000 Sobic005G046100--Sobic004G198000 Sobic010G055500 Sobic010G055500 Sobic005G046100--Sobic010G055500 Sobic005G046100--Sobic009G137800 Sobic005G046100--Sobic001G290200 Sobic003G026300 Sobic003G026300 Sobic005G046100--Sobic003G026300 Sobic007G134600 Sobic007G134600 Sobic001G351700--Sobic007G134600 Sobic001G351700--Sobic004G267300 Sobic001G351700--Sobic001G290200 Sobic004G021100 Sobic004G021100 Sobic001G351700--Sobic004G021100 Sobic009G056800 Sobic009G056800 Sobic001G351700--Sobic009G056800 Sobic001G306000 Sobic001G306000 Sobic001G351700--Sobic001G306000 Sobic003G433100 Sobic003G433100 Sobic001G351700--Sobic003G433100 Sobic009G172400 Sobic009G172400 Sobic001G351700--Sobic009G172400 Sobic001G371200 Sobic001G371200 Sobic001G351700--Sobic001G371200 Sobic002G224450 Sobic002G224450 Sobic008G025900--Sobic002G224450 Sobic005G139800 Sobic005G139800 Sobic008G025900--Sobic005G139800 Sobic004G121000 Sobic004G121000 Sobic008G025900--Sobic004G121000 Sobic005G221425 Sobic005G221425 Sobic008G025900--Sobic005G221425 Sobic009G209800 Sobic009G209800 Sobic008G025900--Sobic009G209800 Sobic001G240400 Sobic001G240400 Sobic008G025900--Sobic001G240400 Sobic009G157500 Sobic009G157500 Sobic008G025900--Sobic009G157500 Sobic005G110427 Sobic005G110427 Sobic008G025900--Sobic005G110427 Sobic008G049701 Sobic008G049701 Sobic008G025900--Sobic008G049701 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic008G174300 Sobic008G174300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G033400 Sobic010G033400 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic004G263900 Sobic004G263900 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400 Sobic006G209500 Sobic006G209500 Sobic002G324200--Sobic006G209500 Sobic004G271900 Sobic004G271900 Sobic002G324200--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic002G324200--Sobic010G263800 Sobic009G117400 Sobic009G117400 Sobic002G324200--Sobic009G117400 Sobic002G324200--Sobic002G157300 Sobic009G156000 Sobic009G156000 Sobic002G324200--Sobic009G156000 Sobic004G256600 Sobic004G256600 Sobic002G324200--Sobic004G256600 Sobic002G324200--Sobic008G025900 Sobic002G077200 Sobic002G077200 Sobic002G324200--Sobic002G077200 Sobic003G081100--Sobic004G153600 Sobic003G079900 Sobic003G079900 Sobic003G081100--Sobic003G079900 Sobic003G081100--Sobic009G137800 Sobic003G333600 Sobic003G333600 Sobic003G081100--Sobic003G333600 Sobic003G081100--Sobic001G351700 Sobic003G081100--Sobic001G290200 Sobic003G305400 Sobic003G305400 Sobic003G081100--Sobic003G305400 Sobic007G026500 Sobic007G026500 Sobic003G081100--Sobic007G026500 Sobic003G081100--Sobic001G424700 Sobic005G167300--Sobic001G451000 Sobic002G115801 Sobic002G115801 Sobic005G167300--Sobic002G115801 Sobic005G167300--Sobic004G198000 Sobic005G167300--Sobic003G026300 Sobic002G284200 Sobic002G284200 Sobic005G167300--Sobic002G284200 SobicK016900 SobicK016900 Sobic005G167300--SobicK016900 Sobic007G150200 Sobic007G150200 Sobic005G167300--Sobic007G150200 Sobic004G188300 Sobic004G188300 Sobic005G167300--Sobic004G188300 Sobic003G117000 Sobic003G117000 Sobic005G167300--Sobic003G117000
Octagon: transcription factors


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