Gene annotation
Transcriptome id Sobic.001G472600.1
Synonym PAT1, Sb01g044280
Functional annotation gibberellin response modulator protein, putative, expressed
UniProt C5WUR2
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48150 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os03g09280.1 : gibberellin response modulator protein, putative, expressed
MaizeGDB (Corn) Zm00025a053190
Brachypodium -
Barley HORVU5Hr1G099160.2 , HORVU5Hr1G099160.3 , HORVU5Hr1G099160.1 , HORVU5Hr1G099160.7 , HORVU5Hr1G099160.4 , HORVU5Hr1G099160.8 , HORVU5Hr1G099160.9 , HORVU4Hr1G071670.1 , HORVU4Hr1G071670.2 , HORVU5Hr1G099160.10
Wheat TraesCS5D02G422300 , TraesCS5D02G419400 , TraesCS5A02G409800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G472600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G019800 expressed protein -
2 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
3 Sobic.001G421300 protein kinase APK1A, chloroplast precursor, putative, expressed -
4 Sobic.006G109300 protein binding protein, putative, expressed -
5 Sobic.002G262600 protein kinase, putative, expressed K13436: pto-interacting protein 1
6 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
8 Sobic.003G084700 - -
9 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
10 Sobic.005G105000 STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
11 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
12 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
13 Sobic.007G158300 phosphoglycerate mutase, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
14 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
15 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
16 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
17 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
18 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
19 Sobic.001G290200 leucine rich repeat containing protein, expressed -
20 Sobic.004G121100 expressed protein -


Gene co-expression network
sample Sobic001G472600 Sobic001G472600 Sobic007G019800 Sobic007G019800 Sobic001G472600--Sobic007G019800 Sobic002G215100 Sobic002G215100 Sobic001G472600--Sobic002G215100 Sobic001G421300 Sobic001G421300 Sobic001G472600--Sobic001G421300 Sobic006G109300 Sobic006G109300 Sobic001G472600--Sobic006G109300 Sobic002G262600 Sobic002G262600 Sobic001G472600--Sobic002G262600 Sobic003G345400 Sobic003G345400 Sobic001G472600--Sobic003G345400 Sobic004G146800 Sobic004G146800 Sobic001G472600--Sobic004G146800 Sobic003G084700 Sobic003G084700 Sobic001G472600--Sobic003G084700 Sobic003G119800 Sobic003G119800 Sobic001G472600--Sobic003G119800 Sobic004G121100 Sobic004G121100 Sobic007G019800--Sobic004G121100 Sobic007G019800--Sobic001G472600 Sobic004G059000 Sobic004G059000 Sobic007G019800--Sobic004G059000 Sobic009G193400 Sobic009G193400 Sobic007G019800--Sobic009G193400 Sobic002G113900 Sobic002G113900 Sobic007G019800--Sobic002G113900 Sobic004G117900 Sobic004G117900 Sobic007G019800--Sobic004G117900 Sobic002G350300 Sobic002G350300 Sobic007G019800--Sobic002G350300 Sobic004G301900 Sobic004G301900 Sobic007G019800--Sobic004G301900 Sobic009G165800 Sobic009G165800 Sobic007G019800--Sobic009G165800 Sobic010G101800 Sobic010G101800 Sobic002G215100--Sobic010G101800 Sobic007G132400 Sobic007G132400 Sobic002G215100--Sobic007G132400 Sobic002G310200 Sobic002G310200 Sobic002G215100--Sobic002G310200 Sobic007G104800 Sobic007G104800 Sobic002G215100--Sobic007G104800 Sobic006G195700 Sobic006G195700 Sobic002G215100--Sobic006G195700 Sobic009G056800 Sobic009G056800 Sobic002G215100--Sobic009G056800 Sobic010G028800 Sobic010G028800 Sobic002G215100--Sobic010G028800 Sobic007G118200 Sobic007G118200 Sobic002G215100--Sobic007G118200 Sobic001G409600 Sobic001G409600 Sobic002G215100--Sobic001G409600 Sobic001G421300--Sobic001G472600 Sobic001G351700 Sobic001G351700 Sobic001G421300--Sobic001G351700 Sobic009G259400 Sobic009G259400 Sobic001G421300--Sobic009G259400 Sobic001G421300--Sobic002G215100 Sobic009G205200 Sobic009G205200 Sobic001G421300--Sobic009G205200 Sobic001G421300--Sobic003G345400 Sobic001G186800 Sobic001G186800 Sobic001G421300--Sobic001G186800 Sobic001G421300--Sobic004G121100 Sobic006G258500 Sobic006G258500 Sobic001G421300--Sobic006G258500 Sobic010G055500 Sobic010G055500 Sobic006G109300--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic006G109300--Sobic010G071200 Sobic004G150400 Sobic004G150400 Sobic006G109300--Sobic004G150400 Sobic010G033400 Sobic010G033400 Sobic006G109300--Sobic010G033400 Sobic002G365100 Sobic002G365100 Sobic006G109300--Sobic002G365100 Sobic008G142700 Sobic008G142700 Sobic006G109300--Sobic008G142700 Sobic001G131800 Sobic001G131800 Sobic006G109300--Sobic001G131800 Sobic007G063200 Sobic007G063200 Sobic006G109300--Sobic007G063200 Sobic002G272800 Sobic002G272800 Sobic006G109300--Sobic002G272800 Sobic001G333200 Sobic001G333200 Sobic002G262600--Sobic001G333200 Sobic002G262600--Sobic002G350300 Sobic006G209500 Sobic006G209500 Sobic002G262600--Sobic006G209500 Sobic004G049100 Sobic004G049100 Sobic002G262600--Sobic004G049100 Sobic006G261800 Sobic006G261800 Sobic002G262600--Sobic006G261800 Sobic004G231400 Sobic004G231400 Sobic002G262600--Sobic004G231400 Sobic006G088100 Sobic006G088100 Sobic002G262600--Sobic006G088100 Sobic002G262600--Sobic004G117900 Sobic007G160600 Sobic007G160600 Sobic002G262600--Sobic007G160600 Sobic003G345400--Sobic009G205200 Sobic001G107500 Sobic001G107500 Sobic003G345400--Sobic001G107500 Sobic003G345400--Sobic002G350300 Sobic003G345400--Sobic004G121100 Sobic009G034200 Sobic009G034200 Sobic003G345400--Sobic009G034200 Sobic006G228500 Sobic006G228500 Sobic003G345400--Sobic006G228500 Sobic003G345400--Sobic001G333200 Sobic001G119300 Sobic001G119300 Sobic003G345400--Sobic001G119300 Sobic010G056200 Sobic010G056200 Sobic003G345400--Sobic010G056200 Sobic001G421900 Sobic001G421900 Sobic004G146800--Sobic001G421900 Sobic001G425800 Sobic001G425800 Sobic004G146800--Sobic001G425800 Sobic001G358000 Sobic001G358000 Sobic004G146800--Sobic001G358000 Sobic004G146800--Sobic001G472600 Sobic005G026100 Sobic005G026100 Sobic004G146800--Sobic005G026100 Sobic010G249100 Sobic010G249100 Sobic004G146800--Sobic010G249100 Sobic004G146800--Sobic009G165800 Sobic004G146800--Sobic007G019800 Sobic006G209400 Sobic006G209400 Sobic004G146800--Sobic006G209400 Sobic003G084700--Sobic001G107500 Sobic007G078600 Sobic007G078600 Sobic003G084700--Sobic007G078600 Sobic009G065100 Sobic009G065100 Sobic003G084700--Sobic009G065100 Sobic004G057400 Sobic004G057400 Sobic003G084700--Sobic004G057400 Sobic008G067600 Sobic008G067600 Sobic003G084700--Sobic008G067600 Sobic001G315100 Sobic001G315100 Sobic003G084700--Sobic001G315100 Sobic001G090400 Sobic001G090400 Sobic003G084700--Sobic001G090400 Sobic004G271900 Sobic004G271900 Sobic003G084700--Sobic004G271900 Sobic009G215800 Sobic009G215800 Sobic003G084700--Sobic009G215800 Sobic009G134600 Sobic009G134600 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic004G031600 Sobic004G031600 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.