Gene annotation
Transcriptome id Sobic.001G421300.1
Synonym Sb01g039630, PK1B, APK1B
Functional annotation protein kinase APK1A, chloroplast precursor, putative, expressed
UniProt C5WQ02
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF146
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G07570 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os03g16740.1 : protein kinase APK1A, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a001835
Brachypodium KQK22342
Barley HORVU4Hr1G059750.4 , HORVU4Hr1G059750.5 , HORVU4Hr1G059750.6 , HORVU4Hr1G059750.7 , HORVU4Hr1G059750.1 , HORVU4Hr1G059750.2 , HORVU4Hr1G059750.3
Wheat TraesCS4D02G208400 , TraesCS4B02G207500 , TraesCS4A02G096900
Populus -


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cDNA sequences
Sobic.001G421300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
2 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
3 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
4 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
5 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
6 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.001G186800 ATPAP18/PAP18, putative, expressed -
8 Sobic.004G121100 expressed protein -
9 Sobic.006G258500 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
10 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
11 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
12 Sobic.006G200600 expressed protein -
13 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -
14 Sobic.010G262000 tRNA-dihydrouridine synthase, putative, expressed K05542: tRNA-dihydrouridine synthase 1
15 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
16 Sobic.008G013600 - -
17 Sobic.007G104800 expressed protein -
18 Sobic.001G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G358000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
20 Sobic.003G341400 phox domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G421300 Sobic001G421300 Sobic001G472600 Sobic001G472600 Sobic001G421300--Sobic001G472600 Sobic001G351700 Sobic001G351700 Sobic001G421300--Sobic001G351700 Sobic009G259400 Sobic009G259400 Sobic001G421300--Sobic009G259400 Sobic002G215100 Sobic002G215100 Sobic001G421300--Sobic002G215100 Sobic009G205200 Sobic009G205200 Sobic001G421300--Sobic009G205200 Sobic003G345400 Sobic003G345400 Sobic001G421300--Sobic003G345400 Sobic001G186800 Sobic001G186800 Sobic001G421300--Sobic001G186800 Sobic004G121100 Sobic004G121100 Sobic001G421300--Sobic004G121100 Sobic006G258500 Sobic006G258500 Sobic001G421300--Sobic006G258500 Sobic007G019800 Sobic007G019800 Sobic001G472600--Sobic007G019800 Sobic001G472600--Sobic002G215100 Sobic001G472600--Sobic001G421300 Sobic006G109300 Sobic006G109300 Sobic001G472600--Sobic006G109300 Sobic002G262600 Sobic002G262600 Sobic001G472600--Sobic002G262600 Sobic001G472600--Sobic003G345400 Sobic004G146800 Sobic004G146800 Sobic001G472600--Sobic004G146800 Sobic003G084700 Sobic003G084700 Sobic001G472600--Sobic003G084700 Sobic003G119800 Sobic003G119800 Sobic001G472600--Sobic003G119800 Sobic007G134600 Sobic007G134600 Sobic001G351700--Sobic007G134600 Sobic004G267300 Sobic004G267300 Sobic001G351700--Sobic004G267300 Sobic001G290200 Sobic001G290200 Sobic001G351700--Sobic001G290200 Sobic004G021100 Sobic004G021100 Sobic001G351700--Sobic004G021100 Sobic009G056800 Sobic009G056800 Sobic001G351700--Sobic009G056800 Sobic001G306000 Sobic001G306000 Sobic001G351700--Sobic001G306000 Sobic003G433100 Sobic003G433100 Sobic001G351700--Sobic003G433100 Sobic009G172400 Sobic009G172400 Sobic001G351700--Sobic009G172400 Sobic001G371200 Sobic001G371200 Sobic001G351700--Sobic001G371200 Sobic009G259400--Sobic004G121100 Sobic002G395801 Sobic002G395801 Sobic009G259400--Sobic002G395801 Sobic003G012200 Sobic003G012200 Sobic009G259400--Sobic003G012200 Sobic009G217100 Sobic009G217100 Sobic009G259400--Sobic009G217100 Sobic003G063000 Sobic003G063000 Sobic009G259400--Sobic003G063000 Sobic010G251000 Sobic010G251000 Sobic009G259400--Sobic010G251000 Sobic006G200600 Sobic006G200600 Sobic009G259400--Sobic006G200600 Sobic001G281600 Sobic001G281600 Sobic009G259400--Sobic001G281600 Sobic008G179700 Sobic008G179700 Sobic009G259400--Sobic008G179700 Sobic010G101800 Sobic010G101800 Sobic002G215100--Sobic010G101800 Sobic007G132400 Sobic007G132400 Sobic002G215100--Sobic007G132400 Sobic002G310200 Sobic002G310200 Sobic002G215100--Sobic002G310200 Sobic007G104800 Sobic007G104800 Sobic002G215100--Sobic007G104800 Sobic006G195700 Sobic006G195700 Sobic002G215100--Sobic006G195700 Sobic002G215100--Sobic009G056800 Sobic010G028800 Sobic010G028800 Sobic002G215100--Sobic010G028800 Sobic007G118200 Sobic007G118200 Sobic002G215100--Sobic007G118200 Sobic001G409600 Sobic001G409600 Sobic002G215100--Sobic001G409600 Sobic009G205200--Sobic004G121100 Sobic001G107500 Sobic001G107500 Sobic009G205200--Sobic001G107500 Sobic002G350300 Sobic002G350300 Sobic009G205200--Sobic002G350300 Sobic009G205200--Sobic007G104800 Sobic009G205200--Sobic006G200600 Sobic009G205200--Sobic003G345400 Sobic001G119300 Sobic001G119300 Sobic009G205200--Sobic001G119300 Sobic003G248200 Sobic003G248200 Sobic009G205200--Sobic003G248200 Sobic009G205200--Sobic008G179700 Sobic003G345400--Sobic009G205200 Sobic003G345400--Sobic001G107500 Sobic003G345400--Sobic002G350300 Sobic003G345400--Sobic004G121100 Sobic009G034200 Sobic009G034200 Sobic003G345400--Sobic009G034200 Sobic006G228500 Sobic006G228500 Sobic003G345400--Sobic006G228500 Sobic001G333200 Sobic001G333200 Sobic003G345400--Sobic001G333200 Sobic003G345400--Sobic001G119300 Sobic010G056200 Sobic010G056200 Sobic003G345400--Sobic010G056200 Sobic002G294800 Sobic002G294800 Sobic001G186800--Sobic002G294800 Sobic004G021200 Sobic004G021200 Sobic001G186800--Sobic004G021200 Sobic003G141500 Sobic003G141500 Sobic001G186800--Sobic003G141500 Sobic001G186800--Sobic006G200600 Sobic001G186800--Sobic001G281600 Sobic003G138500 Sobic003G138500 Sobic001G186800--Sobic003G138500 Sobic010G262000 Sobic010G262000 Sobic001G186800--Sobic010G262000 Sobic009G199200 Sobic009G199200 Sobic001G186800--Sobic009G199200 Sobic005G027400 Sobic005G027400 Sobic001G186800--Sobic005G027400 Sobic004G121100--Sobic009G205200 Sobic004G121100--Sobic006G200600 Sobic004G121100--Sobic006G228500 Sobic004G121100--Sobic001G281600 Sobic004G121100--Sobic009G259400 Sobic007G078500 Sobic007G078500 Sobic004G121100--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic004G121100--Sobic001G080700 Sobic004G121100--Sobic002G350300 Sobic004G121100--Sobic010G251000 Sobic010G056000 Sobic010G056000 Sobic006G258500--Sobic010G056000 Sobic004G290800 Sobic004G290800 Sobic006G258500--Sobic004G290800 Sobic009G215800 Sobic009G215800 Sobic006G258500--Sobic009G215800 Sobic006G258500--Sobic007G134600 Sobic001G111900 Sobic001G111900 Sobic006G258500--Sobic001G111900 Sobic006G258500--Sobic001G107500 Sobic009G134500 Sobic009G134500 Sobic006G258500--Sobic009G134500 Sobic003G383300 Sobic003G383300 Sobic006G258500--Sobic003G383300 Sobic009G127900 Sobic009G127900 Sobic006G258500--Sobic009G127900
Octagon: transcription factors


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