Gene annotation
Transcriptome id Sobic.001G358000.1,Sobic.001G358000.2
Synonym serine/arginine-rich (SR) family, SCL33, SR33, ATSCL33, sb-SCL25A, Sb01g034200
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, putative, expressed
UniProt M1H9C0 , C5WYN3
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF11
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily) KOG0114Predicted RNA-binding protein (RRM superfamily)
KEGG Orthology K12900; FUS-interacting serine-arginine-rich protein 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G55310 : SC35-like splicing factor 33
RAP-DB (Rice) LOC_Os03g25770.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a040989 , Zm00025a047765 , Zm00025a052290
Brachypodium KQK21524
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G358000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
2 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
3 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
4 Sobic.010G223700 MYB transcription factor, putative, expressed -
5 Sobic.004G121100 expressed protein -
6 Sobic.001G113000 tRNA synthetases class II domain containing protein, expressed K01893: NARS, asparaginyl-tRNA synthetase
7 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
8 Sobic.006G200600 expressed protein -
9 Sobic.007G019800 expressed protein -
10 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
11 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
12 Sobic.010G262000 tRNA-dihydrouridine synthase, putative, expressed K05542: tRNA-dihydrouridine synthase 1
13 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
14 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
15 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
16 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
17 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
18 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
19 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
20 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G358000 Sobic001G358000 Sobic009G165800 Sobic009G165800 Sobic001G358000--Sobic009G165800 Sobic004G353200 Sobic004G353200 Sobic001G358000--Sobic004G353200 Sobic004G146800 Sobic004G146800 Sobic001G358000--Sobic004G146800 Sobic010G223700 Sobic010G223700 Sobic001G358000--Sobic010G223700 Sobic004G121100 Sobic004G121100 Sobic001G358000--Sobic004G121100 Sobic001G113000 Sobic001G113000 Sobic001G358000--Sobic001G113000 Sobic001G080700 Sobic001G080700 Sobic001G358000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic001G358000--Sobic006G200600 Sobic007G019800 Sobic007G019800 Sobic001G358000--Sobic007G019800 Sobic009G165800--Sobic001G080700 Sobic001G047400 Sobic001G047400 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic004G353200--Sobic006G200600 Sobic001G392300 Sobic001G392300 Sobic004G353200--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic004G353200--Sobic008G047800 Sobic004G274200 Sobic004G274200 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic001G421900 Sobic001G421900 Sobic004G146800--Sobic001G421900 Sobic001G425800 Sobic001G425800 Sobic004G146800--Sobic001G425800 Sobic004G146800--Sobic001G358000 Sobic001G472600 Sobic001G472600 Sobic004G146800--Sobic001G472600 Sobic005G026100 Sobic005G026100 Sobic004G146800--Sobic005G026100 Sobic010G249100 Sobic010G249100 Sobic004G146800--Sobic010G249100 Sobic004G146800--Sobic009G165800 Sobic004G146800--Sobic007G019800 Sobic006G209400 Sobic006G209400 Sobic004G146800--Sobic006G209400 Sobic003G309200 Sobic003G309200 Sobic010G223700--Sobic003G309200 Sobic003G221900 Sobic003G221900 Sobic010G223700--Sobic003G221900 Sobic001G122832 Sobic001G122832 Sobic010G223700--Sobic001G122832 Sobic010G025300 Sobic010G025300 Sobic010G223700--Sobic010G025300 Sobic010G223700--Sobic001G425800 Sobic001G389100 Sobic001G389100 Sobic010G223700--Sobic001G389100 Sobic004G117900 Sobic004G117900 Sobic010G223700--Sobic004G117900 Sobic003G411900 Sobic003G411900 Sobic010G223700--Sobic003G411900 Sobic003G131400 Sobic003G131400 Sobic010G223700--Sobic003G131400 Sobic009G205200 Sobic009G205200 Sobic004G121100--Sobic009G205200 Sobic004G121100--Sobic006G200600 Sobic006G228500 Sobic006G228500 Sobic004G121100--Sobic006G228500 Sobic001G281600 Sobic001G281600 Sobic004G121100--Sobic001G281600 Sobic009G259400 Sobic009G259400 Sobic004G121100--Sobic009G259400 Sobic007G078500 Sobic007G078500 Sobic004G121100--Sobic007G078500 Sobic004G121100--Sobic001G080700 Sobic002G350300 Sobic002G350300 Sobic004G121100--Sobic002G350300 Sobic004G121100--Sobic010G251000 Sobic001G113000--Sobic002G110700 Sobic002G352600 Sobic002G352600 Sobic001G113000--Sobic002G352600 Sobic001G113000--Sobic001G358000 Sobic001G113000--Sobic004G121100 Sobic010G027600 Sobic010G027600 Sobic001G113000--Sobic010G027600 Sobic004G348100 Sobic004G348100 Sobic001G113000--Sobic004G348100 Sobic001G113000--Sobic001G080700 Sobic007G058700 Sobic007G058700 Sobic001G113000--Sobic007G058700 Sobic002G178601 Sobic002G178601 Sobic001G113000--Sobic002G178601 Sobic001G080700--Sobic001G392300 Sobic001G080700--Sobic009G165800 Sobic001G080700--Sobic010G251000 Sobic001G080700--Sobic004G066200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G080700--Sobic001G007000 Sobic006G200600--Sobic004G353200 Sobic006G200600--Sobic001G281600 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic007G019800--Sobic004G121100 Sobic007G019800--Sobic001G472600 Sobic004G059000 Sobic004G059000 Sobic007G019800--Sobic004G059000 Sobic009G193400 Sobic009G193400 Sobic007G019800--Sobic009G193400 Sobic002G113900 Sobic002G113900 Sobic007G019800--Sobic002G113900 Sobic007G019800--Sobic004G117900 Sobic007G019800--Sobic002G350300 Sobic004G301900 Sobic004G301900 Sobic007G019800--Sobic004G301900 Sobic007G019800--Sobic009G165800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.