Gene annotation
Transcriptome id Sobic.007G006900.1
Synonym Sb07g000760
Functional annotation shwachman-Bodian-Diamond syndrome protein, putative, expressed
UniProt C5YLI6
Pfam PF09377 PF01172
Panther DB PTHR10927 PTHR10927:SF1
NCBI CDD KOG2917; Predicted exosome subunit
KEGG Orthology K14574; SDO1, ribosome maturation protein SDO1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43860 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os08g01620.2 : shwachman-Bodian-Diamond syndrome protein, putative, expressed
MaizeGDB (Corn) Zm00025a040158
Brachypodium KQJ84543
Barley HORVU2Hr1G099410.1 , HORVU2Hr1G099410.2
Wheat TraesCS2B02G444700 , TraesCS2B02G444700 , TraesCS2D02G422900 , TraesCS2A02G424900
Populus -


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cDNA sequences
Sobic.007G006900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
2 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
3 Sobic.003G328600 proline-rich family protein, putative, expressed -
4 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
5 Sobic.002G400200 CS domain containing protein, putative, expressed -
6 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
7 Sobic.002G067600 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
8 Sobic.009G238850 - -
9 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
10 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
11 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
12 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
13 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
14 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -
15 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
16 Sobic.009G195300 DUF803 domain containing, putative, expressed -
17 Sobic.006G052500 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed K00164: OGDH, 2-oxoglutarate dehydrogenase E1 component
18 Sobic.001G154500 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
19 Sobic.001G358000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
20 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -


Gene co-expression network
sample Sobic007G006900 Sobic007G006900 Sobic002G134600 Sobic002G134600 Sobic007G006900--Sobic002G134600 Sobic001G425800 Sobic001G425800 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic001G362200 Sobic001G362200 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic010G249100 Sobic010G249100 Sobic007G006900--Sobic010G249100 Sobic002G067600 Sobic002G067600 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic002G134600--Sobic007G006900 Sobic001G226700 Sobic001G226700 Sobic002G134600--Sobic001G226700 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic001G425800--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic001G425800--Sobic010G223700 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic001G425800--Sobic010G249100 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic001G425800--Sobic004G146800 Sobic008G124900 Sobic008G124900 Sobic001G425800--Sobic008G124900 Sobic003G328600--Sobic009G219000 Sobic003G328600--Sobic007G006900 Sobic003G328600--Sobic010G249100 Sobic003G328600--Sobic001G425800 Sobic003G328600--Sobic002G134600 Sobic009G042700 Sobic009G042700 Sobic003G328600--Sobic009G042700 Sobic006G131000 Sobic006G131000 Sobic003G328600--Sobic006G131000 Sobic003G278500 Sobic003G278500 Sobic003G328600--Sobic003G278500 Sobic003G056100 Sobic003G056100 Sobic003G328600--Sobic003G056100 Sobic003G332500 Sobic003G332500 Sobic001G362200--Sobic003G332500 Sobic003G109700 Sobic003G109700 Sobic001G362200--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic001G362200--Sobic002G134600 Sobic007G183900 Sobic007G183900 Sobic001G362200--Sobic007G183900 Sobic002G400200--Sobic007G006900 Sobic005G104400 Sobic005G104400 Sobic002G400200--Sobic005G104400 Sobic001G262700 Sobic001G262700 Sobic002G400200--Sobic001G262700 Sobic002G400200--Sobic002G134600 Sobic009G167600 Sobic009G167600 Sobic002G400200--Sobic009G167600 Sobic010G174500 Sobic010G174500 Sobic002G400200--Sobic010G174500 Sobic004G306500 Sobic004G306500 Sobic002G400200--Sobic004G306500 Sobic002G400200--Sobic003G119800 Sobic002G400200--Sobic003G309200 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic010G249100--Sobic008G124900 Sobic001G392300 Sobic001G392300 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic002G067100 Sobic002G067100 Sobic002G067600--Sobic002G067100 Sobic001G127000 Sobic001G127000 Sobic002G067600--Sobic001G127000 Sobic002G055100 Sobic002G055100 Sobic002G067600--Sobic002G055100 Sobic006G052500 Sobic006G052500 Sobic002G067600--Sobic006G052500 Sobic002G067600--Sobic009G219000 Sobic002G067600--Sobic007G006900 Sobic006G126100 Sobic006G126100 Sobic002G067600--Sobic006G126100 Sobic003G126600 Sobic003G126600 Sobic002G067600--Sobic003G126600 Sobic003G051200 Sobic003G051200 Sobic002G067600--Sobic003G051200 Sobic010G262000 Sobic010G262000 Sobic009G238850--Sobic010G262000 Sobic001G186800 Sobic001G186800 Sobic009G238850--Sobic001G186800 Sobic004G257100 Sobic004G257100 Sobic009G238850--Sobic004G257100 Sobic001G298600 Sobic001G298600 Sobic009G238850--Sobic001G298600 Sobic001G281600 Sobic001G281600 Sobic009G238850--Sobic001G281600 Sobic008G004600 Sobic008G004600 Sobic009G238850--Sobic008G004600 Sobic002G359400 Sobic002G359400 Sobic009G238850--Sobic002G359400 Sobic008G051200 Sobic008G051200 Sobic009G238850--Sobic008G051200 Sobic009G238850--Sobic006G032900 Sobic009G134600 Sobic009G134600 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic004G031600 Sobic004G031600 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic003G119800--Sobic009G167600
Octagon: transcription factors


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