Gene annotation
Transcriptome id Sobic.002G400200.2,Sobic.002G400200.1
Synonym Sb02g041500
Functional annotation CS domain containing protein, putative, expressed
UniProt C5X444 , A0A1B6QFZ7
Pfam PF04969
Panther DB PTHR12356 PTHR12356:SF18
NCBI CDD KOG2265; Nuclear distribution protein NUDC
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58740 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os01g47770.1 : CS domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a019133 , Zm00025a015334
Brachypodium KQJ82203
Barley HORVU2Hr1G068470.3 , HORVU2Hr1G068470.2 , HORVU2Hr1G068470.1
Wheat TraesCS2A02G279900 , TraesCS2A02G279900 , TraesCS2D02G278900 , TraesCS2B02G296900 , TraesCS2B02G296900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
2 Sobic.005G104400 - -
3 Sobic.001G262700 hhH-GPD superfamily base excision DNA repair protein, putative, expressed -
4 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
5 Sobic.009G167600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.010G174500 protein kinase family protein, putative, expressed -
7 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
8 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
9 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
10 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
11 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
12 Sobic.006G213601 - -
13 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
14 Sobic.003G076500 MYB family transcription factor, putative, expressed -
15 Sobic.010G223700 MYB transcription factor, putative, expressed -
16 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
17 Sobic.001G031600 calmodulin binding protein, putative, expressed -
18 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
19 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
20 Sobic.007G186900 PP2A regulatory subunit TAP46, putative, expressed -


Gene co-expression network
sample Sobic002G400200 Sobic002G400200 Sobic007G006900 Sobic007G006900 Sobic002G400200--Sobic007G006900 Sobic005G104400 Sobic005G104400 Sobic002G400200--Sobic005G104400 Sobic001G262700 Sobic001G262700 Sobic002G400200--Sobic001G262700 Sobic002G134600 Sobic002G134600 Sobic002G400200--Sobic002G134600 Sobic009G167600 Sobic009G167600 Sobic002G400200--Sobic009G167600 Sobic010G174500 Sobic010G174500 Sobic002G400200--Sobic010G174500 Sobic004G306500 Sobic004G306500 Sobic002G400200--Sobic004G306500 Sobic003G119800 Sobic003G119800 Sobic002G400200--Sobic003G119800 Sobic003G309200 Sobic003G309200 Sobic002G400200--Sobic003G309200 Sobic007G006900--Sobic002G134600 Sobic001G425800 Sobic001G425800 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic001G362200 Sobic001G362200 Sobic007G006900--Sobic001G362200 Sobic007G006900--Sobic002G400200 Sobic010G249100 Sobic010G249100 Sobic007G006900--Sobic010G249100 Sobic002G067600 Sobic002G067600 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic007G006900--Sobic003G119800 Sobic005G104400--Sobic001G262700 Sobic010G025300 Sobic010G025300 Sobic005G104400--Sobic010G025300 Sobic010G223700 Sobic010G223700 Sobic005G104400--Sobic010G223700 Sobic005G104400--Sobic002G400200 Sobic010G089100 Sobic010G089100 Sobic005G104400--Sobic010G089100 Sobic005G104400--Sobic009G167600 Sobic004G091100 Sobic004G091100 Sobic005G104400--Sobic004G091100 Sobic007G020600 Sobic007G020600 Sobic005G104400--Sobic007G020600 Sobic002G427050 Sobic002G427050 Sobic005G104400--Sobic002G427050 Sobic001G262700--Sobic003G309200 Sobic001G262700--Sobic005G104400 Sobic003G372500 Sobic003G372500 Sobic001G262700--Sobic003G372500 Sobic005G182000 Sobic005G182000 Sobic001G262700--Sobic005G182000 Sobic007G207000 Sobic007G207000 Sobic001G262700--Sobic007G207000 Sobic001G262700--Sobic002G134600 Sobic009G161550 Sobic009G161550 Sobic001G262700--Sobic009G161550 Sobic001G262700--Sobic010G223700 Sobic001G262700--Sobic002G400200 Sobic002G134600--Sobic003G309200 Sobic002G134600--Sobic007G006900 Sobic001G226700 Sobic001G226700 Sobic002G134600--Sobic001G226700 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic009G167600--Sobic003G119800 Sobic009G167600--Sobic005G104400 Sobic003G044200 Sobic003G044200 Sobic009G167600--Sobic003G044200 Sobic006G218700 Sobic006G218700 Sobic009G167600--Sobic006G218700 Sobic009G167600--Sobic002G400200 Sobic008G025900 Sobic008G025900 Sobic009G167600--Sobic008G025900 Sobic009G167600--Sobic010G025300 Sobic003G433100 Sobic003G433100 Sobic009G167600--Sobic003G433100 Sobic009G134600 Sobic009G134600 Sobic009G167600--Sobic009G134600 Sobic004G234900 Sobic004G234900 Sobic010G174500--Sobic004G234900 Sobic003G413500 Sobic003G413500 Sobic010G174500--Sobic003G413500 Sobic001G503300 Sobic001G503300 Sobic010G174500--Sobic001G503300 Sobic006G092400 Sobic006G092400 Sobic010G174500--Sobic006G092400 Sobic006G225600 Sobic006G225600 Sobic010G174500--Sobic006G225600 Sobic002G130800 Sobic002G130800 Sobic010G174500--Sobic002G130800 Sobic005G105000 Sobic005G105000 Sobic010G174500--Sobic005G105000 Sobic001G180900 Sobic001G180900 Sobic010G174500--Sobic001G180900 Sobic009G138100 Sobic009G138100 Sobic010G174500--Sobic009G138100 Sobic001G481900 Sobic001G481900 Sobic004G306500--Sobic001G481900 Sobic002G187700 Sobic002G187700 Sobic004G306500--Sobic002G187700 Sobic004G306500--Sobic007G020600 Sobic003G086900 Sobic003G086900 Sobic004G306500--Sobic003G086900 Sobic010G196500 Sobic010G196500 Sobic004G306500--Sobic010G196500 Sobic004G306500--Sobic009G161550 Sobic001G128300 Sobic001G128300 Sobic004G306500--Sobic001G128300 Sobic004G306500--Sobic004G091100 Sobic004G169000 Sobic004G169000 Sobic004G306500--Sobic004G169000 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic004G031600 Sobic004G031600 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic003G119800--Sobic009G167600 Sobic003G309200--Sobic010G223700 Sobic003G309200--Sobic002G134600 Sobic003G309200--Sobic001G262700 Sobic008G124900 Sobic008G124900 Sobic003G309200--Sobic008G124900 Sobic003G221900 Sobic003G221900 Sobic003G309200--Sobic003G221900 Sobic006G033200 Sobic006G033200 Sobic003G309200--Sobic006G033200 Sobic002G383600 Sobic002G383600 Sobic003G309200--Sobic002G383600 Sobic010G130000 Sobic010G130000 Sobic003G309200--Sobic010G130000 Sobic001G389100 Sobic001G389100 Sobic003G309200--Sobic001G389100
Octagon: transcription factors


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