Gene annotation
Transcriptome id Sobic.001G262700.1
Synonym
Functional annotation hhH-GPD superfamily base excision DNA repair protein, putative, expressed
UniProt A0A1Z5S7M7
Pfam PF00730
Panther DB PTHR15074 PTHR15074:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006284; base-excision repair


Orthologs (automatic annotation)
TAIR AT3G07930 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os09g01290.1 : hhH-GPD superfamily base excision DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a040583
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G262700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
2 Sobic.005G104400 - -
3 Sobic.003G372500 DUF803 domain containing, putative, expressed -
4 Sobic.005G182000 - -
5 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
6 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
7 Sobic.009G161550 - -
8 Sobic.010G223700 MYB transcription factor, putative, expressed -
9 Sobic.002G400200 CS domain containing protein, putative, expressed -
10 Sobic.010G089100 nucleolar GTP-binding protein 1, putative, expressed -
11 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
12 Sobic.010G141800 expressed protein -
13 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
14 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
16 Sobic.007G020600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
17 Sobic.003G112800 T-complex protein, putative, expressed K09494: T-complex protein 1 subunit beta
18 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
19 Sobic.006G142775 - K11592: DICER1, endoribonuclease Dicer
20 Sobic.004G004300 expressed protein -


Gene co-expression network
sample Sobic001G262700 Sobic001G262700 Sobic003G309200 Sobic003G309200 Sobic001G262700--Sobic003G309200 Sobic005G104400 Sobic005G104400 Sobic001G262700--Sobic005G104400 Sobic003G372500 Sobic003G372500 Sobic001G262700--Sobic003G372500 Sobic005G182000 Sobic005G182000 Sobic001G262700--Sobic005G182000 Sobic007G207000 Sobic007G207000 Sobic001G262700--Sobic007G207000 Sobic002G134600 Sobic002G134600 Sobic001G262700--Sobic002G134600 Sobic009G161550 Sobic009G161550 Sobic001G262700--Sobic009G161550 Sobic010G223700 Sobic010G223700 Sobic001G262700--Sobic010G223700 Sobic002G400200 Sobic002G400200 Sobic001G262700--Sobic002G400200 Sobic003G309200--Sobic010G223700 Sobic003G309200--Sobic002G134600 Sobic003G309200--Sobic001G262700 Sobic008G124900 Sobic008G124900 Sobic003G309200--Sobic008G124900 Sobic003G221900 Sobic003G221900 Sobic003G309200--Sobic003G221900 Sobic006G033200 Sobic006G033200 Sobic003G309200--Sobic006G033200 Sobic002G383600 Sobic002G383600 Sobic003G309200--Sobic002G383600 Sobic010G130000 Sobic010G130000 Sobic003G309200--Sobic010G130000 Sobic001G389100 Sobic001G389100 Sobic003G309200--Sobic001G389100 Sobic005G104400--Sobic001G262700 Sobic010G025300 Sobic010G025300 Sobic005G104400--Sobic010G025300 Sobic005G104400--Sobic010G223700 Sobic005G104400--Sobic002G400200 Sobic010G089100 Sobic010G089100 Sobic005G104400--Sobic010G089100 Sobic009G167600 Sobic009G167600 Sobic005G104400--Sobic009G167600 Sobic004G091100 Sobic004G091100 Sobic005G104400--Sobic004G091100 Sobic007G020600 Sobic007G020600 Sobic005G104400--Sobic007G020600 Sobic002G427050 Sobic002G427050 Sobic005G104400--Sobic002G427050 Sobic007G075400 Sobic007G075400 Sobic003G372500--Sobic007G075400 Sobic010G147100 Sobic010G147100 Sobic003G372500--Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic003G372500--Sobic003G316500 Sobic001G050200 Sobic001G050200 Sobic003G372500--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic003G372500--Sobic009G191000 Sobic010G227100 Sobic010G227100 Sobic003G372500--Sobic010G227100 Sobic001G534700 Sobic001G534700 Sobic003G372500--Sobic001G534700 Sobic003G313500 Sobic003G313500 Sobic003G372500--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic003G372500--Sobic001G390800 Sobic005G182000--Sobic009G161550 Sobic009G139000 Sobic009G139000 Sobic005G182000--Sobic009G139000 Sobic010G141800 Sobic010G141800 Sobic005G182000--Sobic010G141800 Sobic005G182000--Sobic002G427050 Sobic005G182000--Sobic001G262700 Sobic001G481900 Sobic001G481900 Sobic005G182000--Sobic001G481900 Sobic002G427000 Sobic002G427000 Sobic005G182000--Sobic002G427000 Sobic005G182000--Sobic004G091100 Sobic003G247300 Sobic003G247300 Sobic005G182000--Sobic003G247300 Sobic001G125200 Sobic001G125200 Sobic007G207000--Sobic001G125200 Sobic001G474600 Sobic001G474600 Sobic007G207000--Sobic001G474600 Sobic003G101400 Sobic003G101400 Sobic007G207000--Sobic003G101400 Sobic007G207000--Sobic009G191000 Sobic001G196500 Sobic001G196500 Sobic007G207000--Sobic001G196500 Sobic001G540400 Sobic001G540400 Sobic007G207000--Sobic001G540400 Sobic004G351100 Sobic004G351100 Sobic007G207000--Sobic004G351100 Sobic002G309600 Sobic002G309600 Sobic007G207000--Sobic002G309600 Sobic007G207000--Sobic001G050200 Sobic002G134600--Sobic003G309200 Sobic007G006900 Sobic007G006900 Sobic002G134600--Sobic007G006900 Sobic001G226700 Sobic001G226700 Sobic002G134600--Sobic001G226700 Sobic001G425800 Sobic001G425800 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic001G362200 Sobic001G362200 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic009G161550--Sobic009G139000 Sobic004G174200 Sobic004G174200 Sobic009G161550--Sobic004G174200 Sobic009G161550--Sobic010G141800 Sobic009G161550--Sobic005G182000 Sobic009G161550--Sobic004G091100 Sobic004G263600 Sobic004G263600 Sobic009G161550--Sobic004G263600 Sobic002G034100 Sobic002G034100 Sobic009G161550--Sobic002G034100 Sobic001G365900 Sobic001G365900 Sobic009G161550--Sobic001G365900 Sobic006G142775 Sobic006G142775 Sobic009G161550--Sobic006G142775 Sobic010G223700--Sobic003G309200 Sobic010G223700--Sobic003G221900 Sobic010G223700--Sobic001G122832 Sobic010G223700--Sobic010G025300 Sobic010G223700--Sobic001G425800 Sobic010G223700--Sobic001G389100 Sobic004G117900 Sobic004G117900 Sobic010G223700--Sobic004G117900 Sobic003G411900 Sobic003G411900 Sobic010G223700--Sobic003G411900 Sobic003G131400 Sobic003G131400 Sobic010G223700--Sobic003G131400 Sobic002G400200--Sobic007G006900 Sobic002G400200--Sobic005G104400 Sobic002G400200--Sobic001G262700 Sobic002G400200--Sobic002G134600 Sobic002G400200--Sobic009G167600 Sobic010G174500 Sobic010G174500 Sobic002G400200--Sobic010G174500 Sobic004G306500 Sobic004G306500 Sobic002G400200--Sobic004G306500 Sobic003G119800 Sobic003G119800 Sobic002G400200--Sobic003G119800 Sobic002G400200--Sobic003G309200
Octagon: transcription factors


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