Gene annotation
Transcriptome id Sobic.003G112800.1
Synonym Sb03g009490
Functional annotation T-complex protein, putative, expressed
UniProt C5XFR5
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF23
NCBI CDD -
KEGG Orthology K09494; T-complex protein 1 subunit beta
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G20890 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) LOC_Os03g42220.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a023919 , Zm00025a035367
Brachypodium KQK04869
Barley HORVU5Hr1G085530.10 , HORVU5Hr1G085530.11 , HORVU4Hr1G068820.7 , HORVU4Hr1G068820.8 , HORVU4Hr1G068820.2 , HORVU4Hr1G068820.3 , HORVU4Hr1G068820.1 , HORVU4Hr1G068820.6 , HORVU4Hr1G068820.4 , HORVU4Hr1G068820.5 , HORVU5Hr1G085530.8 , HORVU5Hr1G085530.9 , HORVU5Hr1G085530.4 , HORVU5Hr1G085530.5 , HORVU5Hr1G085530.6 , HORVU5Hr1G085530.7 , HORVU5Hr1G085530.1 , HORVU5Hr1G085530.2 , HORVU5Hr1G085530.3
Wheat TraesCS5A02G342600 , TraesCS4B02G250200 , TraesCS5B02G341900 , TraesCS4A02G054800 , TraesCS5D02G347400 , TraesCS4D02G250100
Populus PNT31343 , PNT31341 , PNT31340 , PNT31342 , PNT31344


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cDNA sequences
Sobic.003G112800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
2 Sobic.003G331300 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
3 Sobic.003G043300 early fruit mRNA, putative, expressed -
4 Sobic.001G262700 hhH-GPD superfamily base excision DNA repair protein, putative, expressed -
5 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -
6 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -
7 Sobic.003G185400 - -
8 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
9 Sobic.009G066900 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
10 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
11 Sobic.003G435200 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
12 Sobic.010G228400 zinc finger, C3HC4 type, domain containing protein, expressed -
13 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
14 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
15 Sobic.006G092400 calmodulin binding protein, putative, expressed -
16 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
17 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
18 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
19 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
20 Sobic.002G119700 ankyrin repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G112800 Sobic003G112800 Sobic010G262500 Sobic010G262500 Sobic003G112800--Sobic010G262500 Sobic003G331300 Sobic003G331300 Sobic003G112800--Sobic003G331300 Sobic003G043300 Sobic003G043300 Sobic003G112800--Sobic003G043300 Sobic001G262700 Sobic001G262700 Sobic003G112800--Sobic001G262700 Sobic001G100900 Sobic001G100900 Sobic003G112800--Sobic001G100900 Sobic003G302900 Sobic003G302900 Sobic003G112800--Sobic003G302900 Sobic003G185400 Sobic003G185400 Sobic003G112800--Sobic003G185400 Sobic001G128300 Sobic001G128300 Sobic003G112800--Sobic001G128300 Sobic009G066900 Sobic009G066900 Sobic003G112800--Sobic009G066900 Sobic006G175800 Sobic006G175800 Sobic010G262500--Sobic006G175800 Sobic001G298700 Sobic001G298700 Sobic010G262500--Sobic001G298700 Sobic005G221250 Sobic005G221250 Sobic010G262500--Sobic005G221250 Sobic010G262500--Sobic003G331300 Sobic005G150350 Sobic005G150350 Sobic010G262500--Sobic005G150350 Sobic010G013200 Sobic010G013200 Sobic010G262500--Sobic010G013200 Sobic010G262500--Sobic003G112800 Sobic008G059100 Sobic008G059100 Sobic010G262500--Sobic008G059100 Sobic001G488700 Sobic001G488700 Sobic010G262500--Sobic001G488700 Sobic003G331300--Sobic003G185400 Sobic003G331300--Sobic010G262500 Sobic007G010700 Sobic007G010700 Sobic003G331300--Sobic007G010700 Sobic003G331300--Sobic001G100900 Sobic006G225900 Sobic006G225900 Sobic003G331300--Sobic006G225900 Sobic003G331300--Sobic003G112800 Sobic004G174200 Sobic004G174200 Sobic003G331300--Sobic004G174200 Sobic004G263600 Sobic004G263600 Sobic003G331300--Sobic004G263600 Sobic003G220800 Sobic003G220800 Sobic003G331300--Sobic003G220800 Sobic003G043300--Sobic003G220800 Sobic010G074300 Sobic010G074300 Sobic003G043300--Sobic010G074300 Sobic003G043300--Sobic006G175800 Sobic010G251300 Sobic010G251300 Sobic003G043300--Sobic010G251300 Sobic001G136800 Sobic001G136800 Sobic003G043300--Sobic001G136800 Sobic001G257700 Sobic001G257700 Sobic003G043300--Sobic001G257700 Sobic008G077500 Sobic008G077500 Sobic003G043300--Sobic008G077500 Sobic004G040900 Sobic004G040900 Sobic003G043300--Sobic004G040900 Sobic003G051000 Sobic003G051000 Sobic003G043300--Sobic003G051000 Sobic003G309200 Sobic003G309200 Sobic001G262700--Sobic003G309200 Sobic005G104400 Sobic005G104400 Sobic001G262700--Sobic005G104400 Sobic003G372500 Sobic003G372500 Sobic001G262700--Sobic003G372500 Sobic005G182000 Sobic005G182000 Sobic001G262700--Sobic005G182000 Sobic007G207000 Sobic007G207000 Sobic001G262700--Sobic007G207000 Sobic002G134600 Sobic002G134600 Sobic001G262700--Sobic002G134600 Sobic009G161550 Sobic009G161550 Sobic001G262700--Sobic009G161550 Sobic010G223700 Sobic010G223700 Sobic001G262700--Sobic010G223700 Sobic002G400200 Sobic002G400200 Sobic001G262700--Sobic002G400200 Sobic001G100900--Sobic004G174200 Sobic003G155100 Sobic003G155100 Sobic001G100900--Sobic003G155100 Sobic004G291900 Sobic004G291900 Sobic001G100900--Sobic004G291900 Sobic009G201300 Sobic009G201300 Sobic001G100900--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic001G100900--Sobic009G074400 Sobic008G001200 Sobic008G001200 Sobic001G100900--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic001G100900--Sobic006G219600 Sobic002G211800 Sobic002G211800 Sobic001G100900--Sobic002G211800 Sobic001G100900--Sobic003G220800 Sobic006G033200 Sobic006G033200 Sobic003G302900--Sobic006G033200 Sobic002G311100 Sobic002G311100 Sobic003G302900--Sobic002G311100 Sobic010G147100 Sobic010G147100 Sobic003G302900--Sobic010G147100 Sobic001G107600 Sobic001G107600 Sobic003G302900--Sobic001G107600 Sobic010G278200 Sobic010G278200 Sobic003G302900--Sobic010G278200 Sobic007G203300 Sobic007G203300 Sobic003G302900--Sobic007G203300 Sobic003G264100 Sobic003G264100 Sobic003G302900--Sobic003G264100 Sobic008G047400 Sobic008G047400 Sobic003G302900--Sobic008G047400 Sobic008G093000 Sobic008G093000 Sobic003G302900--Sobic008G093000 Sobic001G066500 Sobic001G066500 Sobic003G185400--Sobic001G066500 Sobic003G185400--Sobic003G331300 Sobic003G185400--Sobic004G263600 Sobic006G043400 Sobic006G043400 Sobic003G185400--Sobic006G043400 Sobic001G016700 Sobic001G016700 Sobic003G185400--Sobic001G016700 Sobic010G102600 Sobic010G102600 Sobic003G185400--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic003G185400--Sobic010G003400 Sobic003G185400--Sobic004G174200 Sobic008G087866 Sobic008G087866 Sobic003G185400--Sobic008G087866 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic004G091100 Sobic004G091100 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic003G198800 Sobic003G198800 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic001G128300--Sobic002G211800 Sobic009G066900--Sobic003G309200 Sobic008G124900 Sobic008G124900 Sobic009G066900--Sobic008G124900 Sobic003G119700 Sobic003G119700 Sobic009G066900--Sobic003G119700 Sobic009G066900--Sobic002G134600 Sobic009G066900--Sobic006G033200 Sobic001G333600 Sobic001G333600 Sobic009G066900--Sobic001G333600 Sobic009G108700 Sobic009G108700 Sobic009G066900--Sobic009G108700 Sobic009G066900--Sobic008G047400 Sobic007G006900 Sobic007G006900 Sobic009G066900--Sobic007G006900
Octagon: transcription factors


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