Gene annotation
Transcriptome id Sobic.010G262500.1
Synonym GAPC, Sb10g029870, GAPC-1, GAPC1
Functional annotation glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
UniProt A0A194YMM6
Pfam PF00044 PF02800
Panther DB PTHR10836 PTHR10836:SF58
NCBI CDD KOG0657; Glyceraldehyde 3-phosphate dehydrogenase
KEGG Orthology K00134; GAPDH, glyceraldehyde 3-phosphate dehydrogenase
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT3G04120 : glyceraldehyde-3-phosphate dehydrogenase C subunit 1
RAP-DB (Rice) LOC_Os08g03290.1 : glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a031861 , Zm00025a040336 , Zm00025a030211 , Zm00025a019093
Brachypodium KQJ94916 , KQJ94926 , KQJ94918 , KQK17032
Barley HORVU6Hr1G089890.1 , HORVU6Hr1G054520.10 , HORVU6Hr1G054520.11 , HORVU6Hr1G054520.12 , HORVU6Hr1G054520.13 , HORVU7Hr1G074690.3 , HORVU7Hr1G074690.2 , HORVU7Hr1G074690.1 , HORVU7Hr1G074690.7 , HORVU7Hr1G074690.6 , HORVU7Hr1G074690.5 , HORVU7Hr1G074690.4 , HORVU7Hr1G074690.9 , HORVU7Hr1G074690.8 , HORVU6Hr1G032070.1 , HORVU6Hr1G032070.2 , HORVU6Hr1G032070.4 , HORVU6Hr1G032070.5 , HORVU6Hr1G032070.6 , HORVU6Hr1G032070.7 , HORVU7Hr1G108580.6 , HORVU7Hr1G108580.5 , HORVU7Hr1G108580.4 , HORVU7Hr1G108580.3 , HORVU7Hr1G108580.2 , HORVU7Hr1G108580.1 , HORVU6Hr1G089910.1 , HORVU6Hr1G054520.9 , HORVU6Hr1G054520.6 , HORVU6Hr1G054520.7 , HORVU6Hr1G054520.4 , HORVU6Hr1G054520.5 , HORVU6Hr1G054520.2 , HORVU6Hr1G054520.3 , HORVU6Hr1G054520.1
Wheat TraesCS7A02G313100 , TraesCS7B02G380500 , TraesCS6D02G196300 , TraesCS6B02G185400 , TraesCS6D02G196300 , TraesCS7B02G234400 , TraesCS7D02G309500 , TraesCS6D02G146900 , TraesCS7A02G478100 , TraesCS6A02G157500 , TraesCS7A02G478100 , TraesCS6A02G213700 , TraesCS6B02G243700 , TraesCS6B02G243700 , TraesCS7B02G213300 , TraesCS7A02G313100 , TraesCS7A02G313100 , TraesCS7A02G478100
Populus PNT25311 , PNT25310 , PNT25308 , PNT25309 , PNT25307


JBrowse

Open New Page


cDNA sequences
Sobic.010G262500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
2 Sobic.001G298700 - -
3 Sobic.005G221250 - -
4 Sobic.003G331300 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
5 Sobic.005G150350 - -
6 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
7 Sobic.003G112800 T-complex protein, putative, expressed K09494: T-complex protein 1 subunit beta
8 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
9 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
10 Sobic.003G190400 rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed -
11 Sobic.002G187700 expressed protein -
12 Sobic.004G131900 - -
13 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.010G196500 zinc-binding protein, putative, expressed -
15 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
16 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
17 Sobic.008G187632 - -
18 Sobic.001G053200 expressed protein -
19 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
20 Sobic.009G110000 phospholipase D p1, putative, expressed -


Gene co-expression network
sample Sobic010G262500 Sobic010G262500 Sobic006G175800 Sobic006G175800 Sobic010G262500--Sobic006G175800 Sobic001G298700 Sobic001G298700 Sobic010G262500--Sobic001G298700 Sobic005G221250 Sobic005G221250 Sobic010G262500--Sobic005G221250 Sobic003G331300 Sobic003G331300 Sobic010G262500--Sobic003G331300 Sobic005G150350 Sobic005G150350 Sobic010G262500--Sobic005G150350 Sobic010G013200 Sobic010G013200 Sobic010G262500--Sobic010G013200 Sobic003G112800 Sobic003G112800 Sobic010G262500--Sobic003G112800 Sobic008G059100 Sobic008G059100 Sobic010G262500--Sobic008G059100 Sobic001G488700 Sobic001G488700 Sobic010G262500--Sobic001G488700 Sobic006G175800--Sobic010G262500 Sobic004G169000 Sobic004G169000 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic002G187700 Sobic002G187700 Sobic006G175800--Sobic002G187700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic001G500800 Sobic001G500800 Sobic006G175800--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic006G175800--Sobic010G196500 Sobic001G298700--Sobic010G262500 Sobic001G298700--Sobic005G221250 Sobic004G233200 Sobic004G233200 Sobic001G298700--Sobic004G233200 Sobic003G086900 Sobic003G086900 Sobic001G298700--Sobic003G086900 Sobic001G298700--Sobic001G488700 Sobic004G131900 Sobic004G131900 Sobic001G298700--Sobic004G131900 Sobic001G298700--Sobic006G175800 Sobic001G298700--Sobic002G187700 Sobic001G298700--Sobic010G196500 Sobic008G187632 Sobic008G187632 Sobic005G221250--Sobic008G187632 Sobic005G221250--Sobic005G150350 Sobic005G221250--Sobic010G262500 Sobic005G221250--Sobic001G298700 Sobic009G139000 Sobic009G139000 Sobic005G221250--Sobic009G139000 Sobic005G182000 Sobic005G182000 Sobic005G221250--Sobic005G182000 Sobic009G161550 Sobic009G161550 Sobic005G221250--Sobic009G161550 Sobic003G160100 Sobic003G160100 Sobic005G221250--Sobic003G160100 Sobic003G061200 Sobic003G061200 Sobic005G221250--Sobic003G061200 Sobic003G185400 Sobic003G185400 Sobic003G331300--Sobic003G185400 Sobic003G331300--Sobic010G262500 Sobic007G010700 Sobic007G010700 Sobic003G331300--Sobic007G010700 Sobic001G100900 Sobic001G100900 Sobic003G331300--Sobic001G100900 Sobic006G225900 Sobic006G225900 Sobic003G331300--Sobic006G225900 Sobic003G331300--Sobic003G112800 Sobic004G174200 Sobic004G174200 Sobic003G331300--Sobic004G174200 Sobic004G263600 Sobic004G263600 Sobic003G331300--Sobic004G263600 Sobic003G220800 Sobic003G220800 Sobic003G331300--Sobic003G220800 Sobic005G150350--Sobic005G221250 Sobic005G150350--Sobic008G187632 Sobic005G150350--Sobic010G262500 Sobic005G150350--Sobic003G160100 Sobic010G020800 Sobic010G020800 Sobic005G150350--Sobic010G020800 Sobic001G352400 Sobic001G352400 Sobic005G150350--Sobic001G352400 Sobic005G150350--Sobic001G298700 Sobic004G006800 Sobic004G006800 Sobic005G150350--Sobic004G006800 Sobic002G383600 Sobic002G383600 Sobic005G150350--Sobic002G383600 Sobic001G268200 Sobic001G268200 Sobic010G013200--Sobic001G268200 Sobic008G081300 Sobic008G081300 Sobic010G013200--Sobic008G081300 Sobic002G311100 Sobic002G311100 Sobic010G013200--Sobic002G311100 Sobic001G049500 Sobic001G049500 Sobic010G013200--Sobic001G049500 Sobic002G294800 Sobic002G294800 Sobic010G013200--Sobic002G294800 Sobic006G086500 Sobic006G086500 Sobic010G013200--Sobic006G086500 Sobic009G201300 Sobic009G201300 Sobic010G013200--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic010G013200--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic010G013200--Sobic010G147100 Sobic003G112800--Sobic010G262500 Sobic003G112800--Sobic003G331300 Sobic003G112800--Sobic003G043300 Sobic001G262700 Sobic001G262700 Sobic003G112800--Sobic001G262700 Sobic003G112800--Sobic001G100900 Sobic003G302900 Sobic003G302900 Sobic003G112800--Sobic003G302900 Sobic003G112800--Sobic003G185400 Sobic001G128300 Sobic001G128300 Sobic003G112800--Sobic001G128300 Sobic009G066900 Sobic009G066900 Sobic003G112800--Sobic009G066900 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic001G481900 Sobic001G481900 Sobic008G059100--Sobic001G481900 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic007G164000 Sobic007G164000 Sobic008G059100--Sobic007G164000 Sobic008G059100--Sobic010G262500 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.