Gene annotation
Transcriptome id Sobic.004G131900.1
Synonym
Functional annotation -
UniProt A0A194YPF7
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G298700 - -
2 Sobic.003G002600 -(PubMedID : 23001790)@GLK2(PubMedID : 24676859)@GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition(PubMedID : 22968911)@myb-like DNA-binding domain containing protein, expressed -
3 Sobic.010G262500 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
4 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
5 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
6 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
7 Sobic.010G196500 zinc-binding protein, putative, expressed -
8 Sobic.001G488700 sucrose transporter 2(PubMedID : 26465154)@sucrose transporter 2(PubMedID : 26465154)@sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
9 Sobic.007G105400 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
10 Sobic.003G162100 membrane associated DUF588 domain containing protein, putative, expressed -
11 Sobic.001G236400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.006G213500 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
13 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
14 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
15 Sobic.002G200700 expressed protein -
16 Sobic.003G086900 C2 domain containing protein, putative, expressed -
17 Sobic.006G011300 membrane related protein CP5, putative, expressed -
18 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
19 Sobic.009G032400 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
20 Sobic.009G082000 TKL_IRAK_DUF26-lc.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic004G131900 Sobic004G131900 Sobic001G298700 Sobic001G298700 Sobic004G131900--Sobic001G298700 Sobic003G002600 Sobic003G002600 Sobic004G131900--Sobic003G002600 Sobic010G262500 Sobic010G262500 Sobic004G131900--Sobic010G262500 Sobic006G175800 Sobic006G175800 Sobic004G131900--Sobic006G175800 Sobic003G403500 Sobic003G403500 Sobic004G131900--Sobic003G403500 Sobic001G500800 Sobic001G500800 Sobic004G131900--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic004G131900--Sobic010G196500 Sobic001G488700 Sobic001G488700 Sobic004G131900--Sobic001G488700 Sobic007G105400 Sobic007G105400 Sobic004G131900--Sobic007G105400 Sobic001G298700--Sobic010G262500 Sobic005G221250 Sobic005G221250 Sobic001G298700--Sobic005G221250 Sobic004G233200 Sobic004G233200 Sobic001G298700--Sobic004G233200 Sobic003G086900 Sobic003G086900 Sobic001G298700--Sobic003G086900 Sobic001G298700--Sobic001G488700 Sobic001G298700--Sobic004G131900 Sobic001G298700--Sobic006G175800 Sobic002G187700 Sobic002G187700 Sobic001G298700--Sobic002G187700 Sobic001G298700--Sobic010G196500 Sobic003G162100 Sobic003G162100 Sobic003G002600--Sobic003G162100 Sobic003G002600--Sobic003G403500 Sobic001G236400 Sobic001G236400 Sobic003G002600--Sobic001G236400 Sobic003G002600--Sobic004G131900 Sobic005G012200 Sobic005G012200 Sobic003G002600--Sobic005G012200 Sobic006G065900 Sobic006G065900 Sobic003G002600--Sobic006G065900 Sobic002G201900 Sobic002G201900 Sobic003G002600--Sobic002G201900 Sobic004G251300 Sobic004G251300 Sobic003G002600--Sobic004G251300 Sobic001G414000 Sobic001G414000 Sobic003G002600--Sobic001G414000 Sobic010G262500--Sobic006G175800 Sobic010G262500--Sobic001G298700 Sobic010G262500--Sobic005G221250 Sobic003G331300 Sobic003G331300 Sobic010G262500--Sobic003G331300 Sobic005G150350 Sobic005G150350 Sobic010G262500--Sobic005G150350 Sobic010G013200 Sobic010G013200 Sobic010G262500--Sobic010G013200 Sobic003G112800 Sobic003G112800 Sobic010G262500--Sobic003G112800 Sobic008G059100 Sobic008G059100 Sobic010G262500--Sobic008G059100 Sobic010G262500--Sobic001G488700 Sobic006G175800--Sobic010G262500 Sobic004G169000 Sobic004G169000 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic006G175800--Sobic002G187700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic003G043300 Sobic003G043300 Sobic006G175800--Sobic003G043300 Sobic006G175800--Sobic001G500800 Sobic006G175800--Sobic010G196500 Sobic002G001000 Sobic002G001000 Sobic003G403500--Sobic002G001000 Sobic003G403500--Sobic001G500800 Sobic003G375900 Sobic003G375900 Sobic003G403500--Sobic003G375900 Sobic002G367100 Sobic002G367100 Sobic003G403500--Sobic002G367100 Sobic003G403500--Sobic003G002600 Sobic004G201700 Sobic004G201700 Sobic003G403500--Sobic004G201700 Sobic003G403500--Sobic004G131900 Sobic002G200700 Sobic002G200700 Sobic003G403500--Sobic002G200700 Sobic004G340800 Sobic004G340800 Sobic003G403500--Sobic004G340800 Sobic001G500800--Sobic001G488700 Sobic001G500800--Sobic010G196500 Sobic001G381200 Sobic001G381200 Sobic001G500800--Sobic001G381200 Sobic006G213500 Sobic006G213500 Sobic001G500800--Sobic006G213500 Sobic001G500800--Sobic002G001000 Sobic001G500800--Sobic002G187700 Sobic001G500800--Sobic003G403500 Sobic003G302800 Sobic003G302800 Sobic001G500800--Sobic003G302800 Sobic001G500800--Sobic006G175800 Sobic010G196500--Sobic001G488700 Sobic010G196500--Sobic001G500800 Sobic010G196500--Sobic003G086900 Sobic002G193100 Sobic002G193100 Sobic010G196500--Sobic002G193100 Sobic007G084300 Sobic007G084300 Sobic010G196500--Sobic007G084300 Sobic002G386100 Sobic002G386100 Sobic010G196500--Sobic002G386100 Sobic008G146900 Sobic008G146900 Sobic010G196500--Sobic008G146900 Sobic010G196500--Sobic001G381200 Sobic010G196500--Sobic002G187700 Sobic001G488700--Sobic008G059100 Sobic001G488700--Sobic001G500800 Sobic001G488700--Sobic010G196500 Sobic001G488700--Sobic002G187700 Sobic001G488700--Sobic004G233200 Sobic001G488700--Sobic006G175800 Sobic001G488700--Sobic003G302800 Sobic001G481900 Sobic001G481900 Sobic001G488700--Sobic001G481900 Sobic002G266000 Sobic002G266000 Sobic001G488700--Sobic002G266000 Sobic007G203300 Sobic007G203300 Sobic007G105400--Sobic007G203300 Sobic007G105400--Sobic003G086900 Sobic007G105400--Sobic004G131900 Sobic004G306500 Sobic004G306500 Sobic007G105400--Sobic004G306500 Sobic007G105400--Sobic010G196500 Sobic007G105400--Sobic001G298700 Sobic007G056600 Sobic007G056600 Sobic007G105400--Sobic007G056600 Sobic007G105400--Sobic010G262500 Sobic007G105400--Sobic006G175800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.