Gene annotation
| Transcriptome id | Sobic.003G002600.1,Sobic.003G002600.2 |
|---|---|
| Synonym | SbGLK2, GPRI1, GLK1, ATGLK1, Sorghum bicolor Golded like gene 2, Sb03g000400, GLK2;Sorghum bicolor GOLDEN2-LIKE, GLK2;Sorghum bicolor Golded like gene 2 |
| Functional annotation | - (PubMedID : 23001790) GLK2 (PubMedID : 24676859) GLK genes are members of the GARP superfamily and functions in a BS or M cell-type specific manner to regulate the proplastid to chloroplast transition (PubMedID : 22968911) myb-like DNA-binding domain containing protein, expressed |
| UniProt | C5XJI7 , A0A1W0VV80 |
| Pfam | PF00249 |
| Panther DB | PTHR31312 PTHR31312:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G20570 : GBF\'s pro-rich region-interacting factor 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g13740.1 : myb-like DNA-binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a022782 |
| Brachypodium | KQK03505 , KQK03504 , KQK03507 , KQK03506 , KQK03503 |
| Barley | HORVU3Hr1G032440.1 , HORVU3Hr1G032440.2 , HORVU3Hr1G032440.3 , HORVU3Hr1G032440.4 , HORVU3Hr1G032440.6 , HORVU3Hr1G032440.7 , HORVU3Hr1G032440.8 , HORVU3Hr1G032440.9 , HORVU7Hr1G083690.1 , HORVU7Hr1G083690.3 , HORVU7Hr1G083690.2 , HORVU3Hr1G032440.5 , HORVU0Hr1G010940.2 , HORVU0Hr1G010940.1 , HORVU0Hr1G007770.1 , HORVU0Hr1G007770.2 , HORVU3Hr1G032440.12 , HORVU3Hr1G032440.13 , HORVU3Hr1G032440.10 , HORVU3Hr1G032440.11 , HORVU3Hr1G032440.14 |
| Wheat | TraesCS3B02G191600 , TraesCS3B02G191600 , TraesCS3A02G161000 , TraesCS3A02G161000 , TraesCS3A02G161000 , TraesCS3D02G168200 , TraesCS3D02G168200 , TraesCS3D02G168200 |
| Populus | - |
JBrowse
| Sobic.003G002600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G162100 | membrane associated DUF588 domain containing protein, putative, expressed | - |
| 2 | Sobic.003G403500 | lysine ketoglutarate reductase trans-splicing related 1, putative, expressed | - |
| 3 | Sobic.001G236400 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 4 | Sobic.004G131900 | - | - |
| 5 | Sobic.005G012200 | STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | K08867: WNK, WNK lysine deficient protein kinase |
| 6 | Sobic.006G065900 | expressed protein | - |
| 7 | Sobic.002G201900 | transporter family protein, putative, expressed | - |
| 8 | Sobic.004G251300 | homeobox associated leucine zipper, putative, expressed | K09338: homeobox-leucine zipper protein |
| 9 | Sobic.001G414000 | TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed | - |
| 10 | Sobic.003G375900 | amino acid transporter, putative, expressed | - |
| 11 | Sobic.002G367100 | protein of unknown function DUF1675 domain containing protein, expressed | - |
| 12 | Sobic.006G130000 | STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed | K13436: pto-interacting protein 1 |
| 13 | Sobic.003G263001 | - | - |
| 14 | Sobic.006G220300 | - | - |
| 15 | Sobic.002G200700 | expressed protein | - |
| 16 | Sobic.007G025900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed | - |
| 17 | Sobic.001G351400 | Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed | - |
| 18 | Sobic.006G011300 | membrane related protein CP5, putative, expressed | - |
| 19 | Sobic.003G246200 | DUF1645 domain containing protein, putative, expressed | - |
| 20 | Sobic.006G213500 | potassium transporter, putative, expressed | K03549: KUP system potassium uptake protein |
Gene co-expression network
Octagon: transcription factors
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