Gene annotation
Transcriptome id Sobic.006G011300.1
Synonym CP5, Sb06g001130
Functional annotation membrane related protein CP5, putative, expressed
UniProt C5YBS4
Pfam PF01852
Panther DB PTHR19308 PTHR19308:SF11
NCBI CDD KOG2761; START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer
KEGG Orthology -
Gene Ontology GO:0008289; lipid binding


Orthologs (automatic annotation)
TAIR AT1G64720 : Polyketide cyclase/dehydrase and lipid transport superfamily protein
RAP-DB (Rice) LOC_Os04g02910.1 : membrane related protein CP5, putative, expressed
MaizeGDB (Corn) Zm00025a012253 , Zm00025a055595
Brachypodium KQJ81559 , KQK20544
Barley -
Wheat TraesCS2D02G010800 , TraesCS2B02G012600 , TraesCS2B02G012600 , TraesCS2A02G010200 , TraesCS2A02G010200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G011300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
2 Sobic.001G251800 OsFBK23 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.001G339500 expressed protein -
4 Sobic.003G043300 early fruit mRNA, putative, expressed -
5 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
6 Sobic.002G200700 expressed protein -
7 Sobic.006G064200 expressed protein -
8 Sobic.004G169000 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
9 Sobic.003G349200 cation efflux family protein, putative, expressed -
10 Sobic.002G217700 growth regulator related protein, putative, expressed -
11 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
12 Sobic.003G051000 expressed protein -
13 Sobic.008G077500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
14 Sobic.003G334000 expressed protein -
15 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.001G133000 expressed protein -
18 Sobic.001G303100 expressed protein -
19 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
20 Sobic.003G343500 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)


Gene co-expression network
sample Sobic006G011300 Sobic006G011300 Sobic003G224100 Sobic003G224100 Sobic006G011300--Sobic003G224100 Sobic001G251800 Sobic001G251800 Sobic006G011300--Sobic001G251800 Sobic001G339500 Sobic001G339500 Sobic006G011300--Sobic001G339500 Sobic003G043300 Sobic003G043300 Sobic006G011300--Sobic003G043300 Sobic006G175800 Sobic006G175800 Sobic006G011300--Sobic006G175800 Sobic002G200700 Sobic002G200700 Sobic006G011300--Sobic002G200700 Sobic006G064200 Sobic006G064200 Sobic006G011300--Sobic006G064200 Sobic004G169000 Sobic004G169000 Sobic006G011300--Sobic004G169000 Sobic003G349200 Sobic003G349200 Sobic006G011300--Sobic003G349200 Sobic003G224100--Sobic002G200700 Sobic003G224100--Sobic006G011300 Sobic002G001000 Sobic002G001000 Sobic003G224100--Sobic002G001000 Sobic003G224100--Sobic001G339500 Sobic003G224100--Sobic006G175800 Sobic003G224100--Sobic006G064200 Sobic008G077500 Sobic008G077500 Sobic003G224100--Sobic008G077500 Sobic001G413000 Sobic001G413000 Sobic003G224100--Sobic001G413000 Sobic006G258700 Sobic006G258700 Sobic003G224100--Sobic006G258700 Sobic009G038900 Sobic009G038900 Sobic001G251800--Sobic009G038900 Sobic001G133000 Sobic001G133000 Sobic001G251800--Sobic001G133000 Sobic006G133900 Sobic006G133900 Sobic001G251800--Sobic006G133900 Sobic003G220100 Sobic003G220100 Sobic001G251800--Sobic003G220100 Sobic004G042200 Sobic004G042200 Sobic001G251800--Sobic004G042200 Sobic005G068700 Sobic005G068700 Sobic001G251800--Sobic005G068700 Sobic003G370700 Sobic003G370700 Sobic001G251800--Sobic003G370700 Sobic004G181600 Sobic004G181600 Sobic001G251800--Sobic004G181600 Sobic001G333800 Sobic001G333800 Sobic001G251800--Sobic001G333800 Sobic002G339600 Sobic002G339600 Sobic001G339500--Sobic002G339600 Sobic002G111200 Sobic002G111200 Sobic001G339500--Sobic002G111200 Sobic001G339500--Sobic003G349200 Sobic006G215600 Sobic006G215600 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic007G033800 Sobic007G033800 Sobic001G339500--Sobic007G033800 Sobic001G339500--Sobic006G011300 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic003G220800 Sobic003G220800 Sobic003G043300--Sobic003G220800 Sobic010G074300 Sobic010G074300 Sobic003G043300--Sobic010G074300 Sobic003G043300--Sobic006G175800 Sobic010G251300 Sobic010G251300 Sobic003G043300--Sobic010G251300 Sobic001G136800 Sobic001G136800 Sobic003G043300--Sobic001G136800 Sobic001G257700 Sobic001G257700 Sobic003G043300--Sobic001G257700 Sobic003G043300--Sobic008G077500 Sobic004G040900 Sobic004G040900 Sobic003G043300--Sobic004G040900 Sobic003G051000 Sobic003G051000 Sobic003G043300--Sobic003G051000 Sobic010G262500 Sobic010G262500 Sobic006G175800--Sobic010G262500 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic002G187700 Sobic002G187700 Sobic006G175800--Sobic002G187700 Sobic001G488700 Sobic001G488700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic006G175800--Sobic003G043300 Sobic001G500800 Sobic001G500800 Sobic006G175800--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic006G175800--Sobic010G196500 Sobic002G200700--Sobic003G224100 Sobic002G200700--Sobic002G001000 Sobic002G201900 Sobic002G201900 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic006G130000 Sobic006G130000 Sobic002G200700--Sobic006G130000 Sobic002G200700--Sobic006G258700 Sobic006G064200--Sobic006G130000 Sobic006G064200--Sobic002G200700 Sobic004G151500 Sobic004G151500 Sobic006G064200--Sobic004G151500 Sobic006G064200--Sobic003G224100 Sobic006G064200--Sobic006G011300 Sobic006G064200--Sobic002G201900 Sobic003G334000 Sobic003G334000 Sobic006G064200--Sobic003G334000 Sobic005G089600 Sobic005G089600 Sobic006G064200--Sobic005G089600 Sobic004G154400 Sobic004G154400 Sobic006G064200--Sobic004G154400 Sobic001G352400 Sobic001G352400 Sobic004G169000--Sobic001G352400 Sobic002G341000 Sobic002G341000 Sobic004G169000--Sobic002G341000 Sobic004G169000--Sobic001G333800 Sobic004G281800 Sobic004G281800 Sobic004G169000--Sobic004G281800 Sobic006G050700 Sobic006G050700 Sobic004G169000--Sobic006G050700 Sobic004G169000--Sobic006G175800 Sobic003G229300 Sobic003G229300 Sobic004G169000--Sobic003G229300 Sobic004G169000--Sobic004G042200 Sobic005G106600 Sobic005G106600 Sobic004G169000--Sobic005G106600 Sobic003G349200--Sobic001G339500 Sobic008G033200 Sobic008G033200 Sobic003G349200--Sobic008G033200 Sobic002G401900 Sobic002G401900 Sobic003G349200--Sobic002G401900 Sobic003G349200--Sobic006G011300 Sobic003G349200--Sobic006G215600 Sobic002G232200 Sobic002G232200 Sobic003G349200--Sobic002G232200 Sobic003G349200--Sobic002G339600 Sobic006G120500 Sobic006G120500 Sobic003G349200--Sobic006G120500 Sobic001G073900 Sobic001G073900 Sobic003G349200--Sobic001G073900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.