Gene annotation
Transcriptome id Sobic.003G224100.1
Synonym Gretchen Hagen3, Sb03g028240, FIN219, JAR1, SbGH3-7
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root" (PubMedID : 20499123)
OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt C5XR50
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF3
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology GO:0009864; induced systemic resistance, jasmonic acid mediated signaling pathway GO:0009694jasmonic acid metabolic process GO:0009611response to wounding


Orthologs (automatic annotation)
TAIR AT2G46370 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os05g50890.2 : OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a038555 , Zm00025a036737
Brachypodium -
Barley -
Wheat TraesCS1B02G459500 , TraesCS1B02G459500 , TraesCS1A02G425100 , TraesCS1A02G425100 , TraesCS1D02G434100 , TraesCS1D02G434100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G200700 expressed protein -
2 Sobic.006G011300 membrane related protein CP5, putative, expressed -
3 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
4 Sobic.001G339500 expressed protein -
5 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
6 Sobic.006G064200 expressed protein -
7 Sobic.008G077500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
8 Sobic.001G413000 ABC transporter family protein, putative, expressed -
9 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
10 Sobic.010G196500 zinc-binding protein, putative, expressed -
11 Sobic.003G014300 expressed protein -
12 Sobic.003G043300 early fruit mRNA, putative, expressed -
13 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
14 Sobic.009G082000 TKL_IRAK_DUF26-lc.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
15 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
16 Sobic.001G072700 expressed protein -
17 Sobic.008G081300 protein kinase, putative, expressed -
18 Sobic.002G136100 genetic modifier, putative, expressed -
19 Sobic.006G212800 expressed protein -
20 Sobic.006G215600 SHR5-receptor-like kinase, putative, expressed -


Gene co-expression network
sample Sobic003G224100 Sobic003G224100 Sobic002G200700 Sobic002G200700 Sobic003G224100--Sobic002G200700 Sobic006G011300 Sobic006G011300 Sobic003G224100--Sobic006G011300 Sobic002G001000 Sobic002G001000 Sobic003G224100--Sobic002G001000 Sobic001G339500 Sobic001G339500 Sobic003G224100--Sobic001G339500 Sobic006G175800 Sobic006G175800 Sobic003G224100--Sobic006G175800 Sobic006G064200 Sobic006G064200 Sobic003G224100--Sobic006G064200 Sobic008G077500 Sobic008G077500 Sobic003G224100--Sobic008G077500 Sobic001G413000 Sobic001G413000 Sobic003G224100--Sobic001G413000 Sobic006G258700 Sobic006G258700 Sobic003G224100--Sobic006G258700 Sobic002G200700--Sobic003G224100 Sobic002G200700--Sobic002G001000 Sobic002G201900 Sobic002G201900 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic006G130000 Sobic006G130000 Sobic002G200700--Sobic006G130000 Sobic002G200700--Sobic006G258700 Sobic006G011300--Sobic003G224100 Sobic001G251800 Sobic001G251800 Sobic006G011300--Sobic001G251800 Sobic006G011300--Sobic001G339500 Sobic003G043300 Sobic003G043300 Sobic006G011300--Sobic003G043300 Sobic006G011300--Sobic006G175800 Sobic006G011300--Sobic002G200700 Sobic006G011300--Sobic006G064200 Sobic004G169000 Sobic004G169000 Sobic006G011300--Sobic004G169000 Sobic003G349200 Sobic003G349200 Sobic006G011300--Sobic003G349200 Sobic007G227700 Sobic007G227700 Sobic002G001000--Sobic007G227700 Sobic002G001000--Sobic002G200700 Sobic004G207400 Sobic004G207400 Sobic002G001000--Sobic004G207400 Sobic010G140600 Sobic010G140600 Sobic002G001000--Sobic010G140600 Sobic001G072700 Sobic001G072700 Sobic002G001000--Sobic001G072700 Sobic010G013200 Sobic010G013200 Sobic002G001000--Sobic010G013200 Sobic008G089900 Sobic008G089900 Sobic002G001000--Sobic008G089900 Sobic003G403500 Sobic003G403500 Sobic002G001000--Sobic003G403500 Sobic002G001000--Sobic003G224100 Sobic002G339600 Sobic002G339600 Sobic001G339500--Sobic002G339600 Sobic002G111200 Sobic002G111200 Sobic001G339500--Sobic002G111200 Sobic001G339500--Sobic003G349200 Sobic006G215600 Sobic006G215600 Sobic001G339500--Sobic006G215600 Sobic004G295300 Sobic004G295300 Sobic001G339500--Sobic004G295300 Sobic007G033800 Sobic007G033800 Sobic001G339500--Sobic007G033800 Sobic001G339500--Sobic006G011300 Sobic001G339500--Sobic003G224100 Sobic006G130800 Sobic006G130800 Sobic001G339500--Sobic006G130800 Sobic010G262500 Sobic010G262500 Sobic006G175800--Sobic010G262500 Sobic006G175800--Sobic004G169000 Sobic002G305000 Sobic002G305000 Sobic006G175800--Sobic002G305000 Sobic002G187700 Sobic002G187700 Sobic006G175800--Sobic002G187700 Sobic001G488700 Sobic001G488700 Sobic006G175800--Sobic001G488700 Sobic003G190400 Sobic003G190400 Sobic006G175800--Sobic003G190400 Sobic006G175800--Sobic003G043300 Sobic001G500800 Sobic001G500800 Sobic006G175800--Sobic001G500800 Sobic010G196500 Sobic010G196500 Sobic006G175800--Sobic010G196500 Sobic006G064200--Sobic006G130000 Sobic006G064200--Sobic002G200700 Sobic004G151500 Sobic004G151500 Sobic006G064200--Sobic004G151500 Sobic006G064200--Sobic003G224100 Sobic006G064200--Sobic006G011300 Sobic006G064200--Sobic002G201900 Sobic003G334000 Sobic003G334000 Sobic006G064200--Sobic003G334000 Sobic005G089600 Sobic005G089600 Sobic006G064200--Sobic005G089600 Sobic004G154400 Sobic004G154400 Sobic006G064200--Sobic004G154400 Sobic007G090900 Sobic007G090900 Sobic008G077500--Sobic007G090900 Sobic004G268300 Sobic004G268300 Sobic008G077500--Sobic004G268300 Sobic001G243200 Sobic001G243200 Sobic008G077500--Sobic001G243200 Sobic008G052900 Sobic008G052900 Sobic008G077500--Sobic008G052900 Sobic009G103000 Sobic009G103000 Sobic008G077500--Sobic009G103000 Sobic006G212800 Sobic006G212800 Sobic008G077500--Sobic006G212800 Sobic003G157900 Sobic003G157900 Sobic008G077500--Sobic003G157900 Sobic003G260100 Sobic003G260100 Sobic008G077500--Sobic003G260100 Sobic002G162400 Sobic002G162400 Sobic008G077500--Sobic002G162400 Sobic002G173100 Sobic002G173100 Sobic001G413000--Sobic002G173100 Sobic006G259600 Sobic006G259600 Sobic001G413000--Sobic006G259600 Sobic001G413000--Sobic001G243200 Sobic007G090403 Sobic007G090403 Sobic001G413000--Sobic007G090403 Sobic003G080700 Sobic003G080700 Sobic001G413000--Sobic003G080700 Sobic005G179300 Sobic005G179300 Sobic001G413000--Sobic005G179300 Sobic009G082000 Sobic009G082000 Sobic001G413000--Sobic009G082000 Sobic003G160100 Sobic003G160100 Sobic001G413000--Sobic003G160100 Sobic009G219100 Sobic009G219100 Sobic001G413000--Sobic009G219100 Sobic003G014300 Sobic003G014300 Sobic006G258700--Sobic003G014300 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic001G351400 Sobic001G351400 Sobic006G258700--Sobic001G351400 Sobic003G037300 Sobic003G037300 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic001G286600 Sobic001G286600 Sobic006G258700--Sobic001G286600 Sobic001G404500 Sobic001G404500 Sobic006G258700--Sobic001G404500
Octagon: transcription factors


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