Gene annotation
Transcriptome id Sobic.002G200700.1
Synonym Sb02g024620
Functional annotation expressed protein
UniProt A0A1W0W517
Pfam PF07891
Panther DB PTHR10759 PTHR10759:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G39785 : Protein of unknown function (DUF1666)
RAP-DB (Rice) LOC_Os09g24700.1 : expressed protein
MaizeGDB (Corn) Zm00025a013924 , Zm00025a046965
Brachypodium KQJ90227 , KQJ90226
Barley HORVU5Hr1G065960.1 , HORVU5Hr1G065960.3 , HORVU5Hr1G065960.2 , HORVU5Hr1G065960.5 , HORVU5Hr1G065960.7 , HORVU5Hr1G065960.6 , HORVU5Hr1G065960.4
Wheat TraesCS5A02G227700 , TraesCS5A02G227700 , TraesCS5D02G235200 , TraesCS5D02G235200 , TraesCS5B02G226500 , TraesCS5B02G226500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G224100 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
2 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
3 Sobic.002G201900 transporter family protein, putative, expressed -
4 Sobic.003G007700 ethylene-responsive protein related, putative, expressed -
5 Sobic.006G064200 expressed protein -
6 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -
7 Sobic.002G136100 genetic modifier, putative, expressed -
8 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
9 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
10 Sobic.005G012200 STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
11 Sobic.003G403500 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
12 Sobic.006G011300 membrane related protein CP5, putative, expressed -
13 Sobic.001G500800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-coumarate--CoA ligase-like 7, putative, expressed K01904: 4-coumarate--CoA ligase
14 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
15 Sobic.006G212800 expressed protein -
16 Sobic.010G140600 bolA, putative, expressed -
17 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
18 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
19 Sobic.007G062200 expressed protein -
20 Sobic.004G154400 drought-induced protein 1, putative, expressed -


Gene co-expression network
sample Sobic002G200700 Sobic002G200700 Sobic003G224100 Sobic003G224100 Sobic002G200700--Sobic003G224100 Sobic002G001000 Sobic002G001000 Sobic002G200700--Sobic002G001000 Sobic002G201900 Sobic002G201900 Sobic002G200700--Sobic002G201900 Sobic003G007700 Sobic003G007700 Sobic002G200700--Sobic003G007700 Sobic006G064200 Sobic006G064200 Sobic002G200700--Sobic006G064200 Sobic010G269400 Sobic010G269400 Sobic002G200700--Sobic010G269400 Sobic002G136100 Sobic002G136100 Sobic002G200700--Sobic002G136100 Sobic006G130000 Sobic006G130000 Sobic002G200700--Sobic006G130000 Sobic006G258700 Sobic006G258700 Sobic002G200700--Sobic006G258700 Sobic003G224100--Sobic002G200700 Sobic006G011300 Sobic006G011300 Sobic003G224100--Sobic006G011300 Sobic003G224100--Sobic002G001000 Sobic001G339500 Sobic001G339500 Sobic003G224100--Sobic001G339500 Sobic006G175800 Sobic006G175800 Sobic003G224100--Sobic006G175800 Sobic003G224100--Sobic006G064200 Sobic008G077500 Sobic008G077500 Sobic003G224100--Sobic008G077500 Sobic001G413000 Sobic001G413000 Sobic003G224100--Sobic001G413000 Sobic003G224100--Sobic006G258700 Sobic007G227700 Sobic007G227700 Sobic002G001000--Sobic007G227700 Sobic002G001000--Sobic002G200700 Sobic004G207400 Sobic004G207400 Sobic002G001000--Sobic004G207400 Sobic010G140600 Sobic010G140600 Sobic002G001000--Sobic010G140600 Sobic001G072700 Sobic001G072700 Sobic002G001000--Sobic001G072700 Sobic010G013200 Sobic010G013200 Sobic002G001000--Sobic010G013200 Sobic008G089900 Sobic008G089900 Sobic002G001000--Sobic008G089900 Sobic003G403500 Sobic003G403500 Sobic002G001000--Sobic003G403500 Sobic002G001000--Sobic003G224100 Sobic002G201900--Sobic002G200700 Sobic007G025900 Sobic007G025900 Sobic002G201900--Sobic007G025900 Sobic002G201900--Sobic006G130000 Sobic003G246200 Sobic003G246200 Sobic002G201900--Sobic003G246200 Sobic006G065900 Sobic006G065900 Sobic002G201900--Sobic006G065900 Sobic002G201900--Sobic006G064200 Sobic003G397600 Sobic003G397600 Sobic002G201900--Sobic003G397600 Sobic002G201900--Sobic003G224100 Sobic007G141700 Sobic007G141700 Sobic002G201900--Sobic007G141700 Sobic003G007700--Sobic006G258700 Sobic003G007700--Sobic010G269400 Sobic005G012200 Sobic005G012200 Sobic003G007700--Sobic005G012200 Sobic003G007700--Sobic002G200700 Sobic001G351400 Sobic001G351400 Sobic003G007700--Sobic001G351400 Sobic003G007700--Sobic002G136100 Sobic009G034600 Sobic009G034600 Sobic003G007700--Sobic009G034600 Sobic003G014300 Sobic003G014300 Sobic003G007700--Sobic003G014300 Sobic010G058200 Sobic010G058200 Sobic003G007700--Sobic010G058200 Sobic006G064200--Sobic006G130000 Sobic006G064200--Sobic002G200700 Sobic004G151500 Sobic004G151500 Sobic006G064200--Sobic004G151500 Sobic006G064200--Sobic003G224100 Sobic006G064200--Sobic006G011300 Sobic006G064200--Sobic002G201900 Sobic003G334000 Sobic003G334000 Sobic006G064200--Sobic003G334000 Sobic005G089600 Sobic005G089600 Sobic006G064200--Sobic005G089600 Sobic004G154400 Sobic004G154400 Sobic006G064200--Sobic004G154400 Sobic001G286600 Sobic001G286600 Sobic010G269400--Sobic001G286600 Sobic010G269400--Sobic006G258700 Sobic010G269400--Sobic010G140600 Sobic010G269400--Sobic010G058200 Sobic003G037300 Sobic003G037300 Sobic010G269400--Sobic003G037300 Sobic010G269400--Sobic003G014300 Sobic002G102200 Sobic002G102200 Sobic010G269400--Sobic002G102200 Sobic006G110900 Sobic006G110900 Sobic010G269400--Sobic006G110900 Sobic009G062400 Sobic009G062400 Sobic010G269400--Sobic009G062400 Sobic002G136100--Sobic004G154400 Sobic006G212800 Sobic006G212800 Sobic002G136100--Sobic006G212800 Sobic009G207900 Sobic009G207900 Sobic002G136100--Sobic009G207900 Sobic002G136100--Sobic010G058200 Sobic002G136100--Sobic001G286600 Sobic003G328100 Sobic003G328100 Sobic002G136100--Sobic003G328100 Sobic002G136100--Sobic009G062400 Sobic003G157900 Sobic003G157900 Sobic002G136100--Sobic003G157900 Sobic007G015500 Sobic007G015500 Sobic002G136100--Sobic007G015500 Sobic006G130000--Sobic006G064200 Sobic006G055000 Sobic006G055000 Sobic006G130000--Sobic006G055000 Sobic008G033200 Sobic008G033200 Sobic006G130000--Sobic008G033200 Sobic006G130000--Sobic002G201900 Sobic006G130000--Sobic002G200700 Sobic006G130000--Sobic005G089600 Sobic006G130000--Sobic007G141700 Sobic002G232200 Sobic002G232200 Sobic006G130000--Sobic002G232200 Sobic006G130000--Sobic003G224100 Sobic006G258700--Sobic003G014300 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic006G258700--Sobic001G351400 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic006G258700--Sobic001G286600 Sobic001G404500 Sobic001G404500 Sobic006G258700--Sobic001G404500
Octagon: transcription factors


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