Gene annotation
Transcriptome id Sobic.001G049500.2,Sobic.001G049500.1
Synonym Sb01g004540
Functional annotation -
UniProt A0A1B6QHD4
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF235
NCBI CDD -
KEGG Orthology K11594; DDX3X, ATP-dependent RNA helicase DDX3X
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G42520 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g59050.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a016013 , Zm00025a016012
Brachypodium KQK12606 , KQK12607
Barley HORVU5Hr1G109340.8 , HORVU5Hr1G109340.9 , HORVU5Hr1G109340.1 , HORVU5Hr1G109340.2 , HORVU5Hr1G109340.3 , HORVU5Hr1G109340.4 , HORVU5Hr1G109340.6 , HORVU5Hr1G109340.7 , HORVU5Hr1G109340.5 , HORVU5Hr1G109340.10 , HORVU5Hr1G109340.11
Wheat TraesCS5D02G465100 , TraesCS5B02G464500 , TraesCS5B02G464500 , TraesCS5A02G454600
Populus -


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cDNA sequences
Sobic.001G049500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G013200 CPuORF21 - conserved peptide uORF-containing transcript, expressed K08829: male germ cell-associated kinase
2 Sobic.008G081300 protein kinase, putative, expressed -
3 Sobic.009G201300 - -
4 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
6 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
7 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
8 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
9 Sobic.001G396000 OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed -
10 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
11 Sobic.005G026000 expressed protein -
12 Sobic.003G264800 expressed protein -
13 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.002G346200 expressed protein -
15 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
16 Sobic.001G303100 expressed protein -
17 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
18 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
19 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.008G077500 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -


Gene co-expression network
sample Sobic001G049500 Sobic001G049500 Sobic010G013200 Sobic010G013200 Sobic001G049500--Sobic010G013200 Sobic008G081300 Sobic008G081300 Sobic001G049500--Sobic008G081300 Sobic009G201300 Sobic009G201300 Sobic001G049500--Sobic009G201300 Sobic002G311100 Sobic002G311100 Sobic001G049500--Sobic002G311100 Sobic001G251100 Sobic001G251100 Sobic001G049500--Sobic001G251100 Sobic003G340600 Sobic003G340600 Sobic001G049500--Sobic003G340600 Sobic001G241100 Sobic001G241100 Sobic001G049500--Sobic001G241100 Sobic006G219600 Sobic006G219600 Sobic001G049500--Sobic006G219600 Sobic001G396000 Sobic001G396000 Sobic001G049500--Sobic001G396000 Sobic001G268200 Sobic001G268200 Sobic010G013200--Sobic001G268200 Sobic010G013200--Sobic008G081300 Sobic010G013200--Sobic002G311100 Sobic010G013200--Sobic001G049500 Sobic002G294800 Sobic002G294800 Sobic010G013200--Sobic002G294800 Sobic006G086500 Sobic006G086500 Sobic010G013200--Sobic006G086500 Sobic010G013200--Sobic009G201300 Sobic009G074400 Sobic009G074400 Sobic010G013200--Sobic009G074400 Sobic010G147100 Sobic010G147100 Sobic010G013200--Sobic010G147100 Sobic008G081300--Sobic010G013200 Sobic008G081300--Sobic001G049500 Sobic006G083800 Sobic006G083800 Sobic008G081300--Sobic006G083800 Sobic002G001000 Sobic002G001000 Sobic008G081300--Sobic002G001000 Sobic008G172300 Sobic008G172300 Sobic008G081300--Sobic008G172300 Sobic008G081300--Sobic001G268200 Sobic008G081300--Sobic001G396000 Sobic001G402500 Sobic001G402500 Sobic008G081300--Sobic001G402500 Sobic004G026500 Sobic004G026500 Sobic008G081300--Sobic004G026500 Sobic009G201300--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic004G244900 Sobic004G244900 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic008G001200 Sobic008G001200 Sobic009G201300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic009G201300--Sobic001G457800 Sobic002G211800 Sobic002G211800 Sobic009G201300--Sobic002G211800 Sobic002G311100--Sobic010G147100 Sobic002G311100--Sobic009G074400 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic003G340600--Sobic008G172300 Sobic003G221900 Sobic003G221900 Sobic003G340600--Sobic003G221900 Sobic002G167500 Sobic002G167500 Sobic003G340600--Sobic002G167500 Sobic010G092300 Sobic010G092300 Sobic003G340600--Sobic010G092300 Sobic003G398700 Sobic003G398700 Sobic003G340600--Sobic003G398700 Sobic009G162600 Sobic009G162600 Sobic003G340600--Sobic009G162600 Sobic004G181600 Sobic004G181600 Sobic003G340600--Sobic004G181600 Sobic003G340600--Sobic010G013200 Sobic003G340600--Sobic006G086500 Sobic001G241100--Sobic002G294800 Sobic005G027400 Sobic005G027400 Sobic001G241100--Sobic005G027400 Sobic001G241100--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic001G241100--Sobic001G289800 Sobic001G241100--Sobic001G268200 Sobic006G199200 Sobic006G199200 Sobic001G241100--Sobic006G199200 Sobic001G241100--Sobic010G147100 Sobic001G289600 Sobic001G289600 Sobic001G241100--Sobic001G289600 Sobic001G079200 Sobic001G079200 Sobic001G241100--Sobic001G079200 Sobic006G219600--Sobic003G155100 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic001G124100 Sobic001G124100 Sobic001G396000--Sobic001G124100 Sobic004G262700 Sobic004G262700 Sobic001G396000--Sobic004G262700 Sobic002G345700 Sobic002G345700 Sobic001G396000--Sobic002G345700 Sobic002G339300 Sobic002G339300 Sobic001G396000--Sobic002G339300 Sobic001G396000--Sobic010G013200 Sobic002G146300 Sobic002G146300 Sobic001G396000--Sobic002G146300 Sobic007G103100 Sobic007G103100 Sobic001G396000--Sobic007G103100 Sobic001G219700 Sobic001G219700 Sobic001G396000--Sobic001G219700 Sobic002G193100 Sobic002G193100 Sobic001G396000--Sobic002G193100
Octagon: transcription factors


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