Gene annotation
Transcriptome id Sobic.003G122500.1
Synonym Sb03g010380, UBA2A
Functional annotation RNA binding protein, putative, expressed
UniProt C5XGI6
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF490
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G41060 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g16090.1 : RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a024018
Brachypodium PNT70314 , KQK03779 , KQK03780
Barley HORVU3Hr1G037280.9 , HORVU3Hr1G037280.1 , HORVU3Hr1G037280.3 , HORVU3Hr1G037280.4 , HORVU3Hr1G037280.7 , HORVU3Hr1G037280.6 , HORVU3Hr1G037280.13
Wheat TraesCS3B02G211700
Populus -


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cDNA sequences
Sobic.003G122500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G084100 expressed protein -
2 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
3 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
4 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
5 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
6 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
7 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
8 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
9 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
10 Sobic.010G143800 expressed protein -
11 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
13 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
14 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
16 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
17 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
18 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
19 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
20 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3


Gene co-expression network
sample Sobic003G122500 Sobic003G122500 Sobic007G084100 Sobic007G084100 Sobic003G122500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic003G122500--Sobic005G160400 Sobic003G123000 Sobic003G123000 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic001G119900 Sobic001G119900 Sobic003G122500--Sobic001G119900 Sobic010G171100 Sobic010G171100 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic010G237900 Sobic010G237900 Sobic007G084100--Sobic010G237900 Sobic007G084100--Sobic005G160400 Sobic007G084100--Sobic003G122500 Sobic001G473600 Sobic001G473600 Sobic007G084100--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic007G084100--Sobic001G114500 Sobic007G183900 Sobic007G183900 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic005G172500 Sobic005G172500 Sobic007G084100--Sobic005G172500 Sobic004G185800 Sobic004G185800 Sobic007G084100--Sobic004G185800 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic005G160400--Sobic007G084100 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic005G160400--Sobic001G114500 Sobic003G123000--Sobic003G122500 Sobic004G095300 Sobic004G095300 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic003G123000--Sobic001G473600 Sobic002G294800 Sobic002G294800 Sobic001G241100--Sobic002G294800 Sobic005G027400 Sobic005G027400 Sobic001G241100--Sobic005G027400 Sobic003G195000 Sobic003G195000 Sobic001G241100--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic001G241100--Sobic001G289800 Sobic001G268200 Sobic001G268200 Sobic001G241100--Sobic001G268200 Sobic001G241100--Sobic006G199200 Sobic010G147100 Sobic010G147100 Sobic001G241100--Sobic010G147100 Sobic001G289600 Sobic001G289600 Sobic001G241100--Sobic001G289600 Sobic001G079200 Sobic001G079200 Sobic001G241100--Sobic001G079200 Sobic001G119900--Sobic003G122500 Sobic010G228700 Sobic010G228700 Sobic001G119900--Sobic010G228700 Sobic004G235300 Sobic004G235300 Sobic001G119900--Sobic004G235300 Sobic008G051200 Sobic008G051200 Sobic001G119900--Sobic008G051200 Sobic002G083900 Sobic002G083900 Sobic001G119900--Sobic002G083900 Sobic009G155250 Sobic009G155250 Sobic001G119900--Sobic009G155250 Sobic010G085200 Sobic010G085200 Sobic001G119900--Sobic010G085200 Sobic001G251100 Sobic001G251100 Sobic001G119900--Sobic001G251100 Sobic002G052700 Sobic002G052700 Sobic001G119900--Sobic002G052700 Sobic010G171100--Sobic004G095300 Sobic010G171100--Sobic003G122500 Sobic010G171100--Sobic003G123000 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic002G058700 Sobic002G058700 Sobic010G171100--Sobic002G058700 Sobic010G171100--Sobic007G084100 Sobic006G180000 Sobic006G180000 Sobic002G047700--Sobic006G180000 Sobic010G020400 Sobic010G020400 Sobic002G047700--Sobic010G020400 Sobic001G007000 Sobic001G007000 Sobic002G047700--Sobic001G007000 Sobic001G031100 Sobic001G031100 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic008G070800 Sobic008G070800 Sobic002G047700--Sobic008G070800 Sobic001G014800 Sobic001G014800 Sobic002G047700--Sobic001G014800 Sobic003G264200 Sobic003G264200 Sobic002G047700--Sobic003G264200 Sobic009G044800 Sobic009G044800 Sobic002G047700--Sobic009G044800 Sobic006G199200--Sobic003G195000 Sobic010G205800 Sobic010G205800 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic006G199200--Sobic001G241100 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic001G121200 Sobic001G121200 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic006G199200--Sobic001G289800 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300
Octagon: transcription factors


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