Gene annotation
Transcriptome id Sobic.001G119900.3,Sobic.001G119900.1,Sobic.001G119900.2
Synonym Sb01g010590
Functional annotation -
UniProt A0A1Z5S5B4 , A0A1B6QIK6
Pfam PF00271 PF00270
Panther DB PTHR24031
NCBI CDD -
KEGG Orthology K12858; DDX23, ATP-dependent RNA helicase DDX23/PRP28
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G28180 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g50090.3,LOC_Os03g50090.2 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a007807 , Zm00025a017015
Brachypodium KQK04735 , KQK13590
Barley HORVU4Hr1G007110.32 , HORVU4Hr1G007110.31 , HORVU4Hr1G007110.30 , HORVU4Hr1G007110.28 , HORVU4Hr1G007110.29 , HORVU4Hr1G007110.20 , HORVU4Hr1G007110.21 , HORVU4Hr1G007110.22 , HORVU4Hr1G007110.23 , HORVU4Hr1G007110.24 , HORVU4Hr1G007110.25 , HORVU4Hr1G007110.26 , HORVU4Hr1G007110.27 , HORVU4Hr1G007110.10 , HORVU4Hr1G007110.9 , HORVU4Hr1G007110.8 , HORVU4Hr1G007110.1 , HORVU4Hr1G007110.3 , HORVU4Hr1G007110.2 , HORVU4Hr1G007110.5 , HORVU4Hr1G007110.4 , HORVU4Hr1G007110.7 , HORVU4Hr1G007110.6 , HORVU4Hr1G007110.19 , HORVU4Hr1G007110.18 , HORVU4Hr1G007110.15 , HORVU4Hr1G007110.14 , HORVU4Hr1G007110.17 , HORVU4Hr1G007110.16 , HORVU4Hr1G007110.11 , HORVU4Hr1G007110.13 , HORVU4Hr1G007110.12
Wheat -
Populus PNT00258 , PNT09474


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cDNA sequences
Sobic.001G119900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
3 Sobic.004G235300 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
4 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
5 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
6 Sobic.009G155250 - -
7 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
8 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
9 Sobic.002G052700 cyclophilin, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
10 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.002G389900 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed -
12 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
13 Sobic.004G136500 - -
14 Sobic.001G544500 expressed protein -
15 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
16 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
17 Sobic.004G155600 dnaJ domain containing protein, expressed -
18 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
19 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
20 Sobic.001G002600 expressed protein -


Gene co-expression network
sample Sobic001G119900 Sobic001G119900 Sobic003G122500 Sobic003G122500 Sobic001G119900--Sobic003G122500 Sobic010G228700 Sobic010G228700 Sobic001G119900--Sobic010G228700 Sobic004G235300 Sobic004G235300 Sobic001G119900--Sobic004G235300 Sobic008G051200 Sobic008G051200 Sobic001G119900--Sobic008G051200 Sobic002G083900 Sobic002G083900 Sobic001G119900--Sobic002G083900 Sobic009G155250 Sobic009G155250 Sobic001G119900--Sobic009G155250 Sobic010G085200 Sobic010G085200 Sobic001G119900--Sobic010G085200 Sobic001G251100 Sobic001G251100 Sobic001G119900--Sobic001G251100 Sobic002G052700 Sobic002G052700 Sobic001G119900--Sobic002G052700 Sobic007G084100 Sobic007G084100 Sobic003G122500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic003G122500--Sobic005G160400 Sobic003G123000 Sobic003G123000 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic003G122500--Sobic001G119900 Sobic010G171100 Sobic010G171100 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic001G544500 Sobic001G544500 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic004G155600 Sobic004G155600 Sobic004G235300--Sobic004G155600 Sobic002G425500 Sobic002G425500 Sobic004G235300--Sobic002G425500 Sobic001G461400 Sobic001G461400 Sobic004G235300--Sobic001G461400 Sobic010G237900 Sobic010G237900 Sobic004G235300--Sobic010G237900 Sobic006G080400 Sobic006G080400 Sobic004G235300--Sobic006G080400 Sobic001G002600 Sobic001G002600 Sobic004G235300--Sobic001G002600 Sobic001G501800 Sobic001G501800 Sobic004G235300--Sobic001G501800 Sobic001G151100 Sobic001G151100 Sobic004G235300--Sobic001G151100 Sobic001G275300 Sobic001G275300 Sobic004G235300--Sobic001G275300 Sobic004G171200 Sobic004G171200 Sobic008G051200--Sobic004G171200 Sobic008G051200--Sobic001G251100 Sobic008G051200--Sobic006G125900 Sobic004G185800 Sobic004G185800 Sobic008G051200--Sobic004G185800 Sobic001G493200 Sobic001G493200 Sobic008G051200--Sobic001G493200 Sobic001G089600 Sobic001G089600 Sobic008G051200--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic008G051200--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic008G051200--Sobic001G393900 Sobic004G030800 Sobic004G030800 Sobic008G051200--Sobic004G030800 Sobic002G083900--Sobic010G085200 Sobic001G234200 Sobic001G234200 Sobic002G083900--Sobic001G234200 Sobic003G167900 Sobic003G167900 Sobic002G083900--Sobic003G167900 Sobic006G010000 Sobic006G010000 Sobic002G083900--Sobic006G010000 Sobic002G083900--Sobic001G251100 Sobic006G036100 Sobic006G036100 Sobic002G083900--Sobic006G036100 Sobic008G088806 Sobic008G088806 Sobic002G083900--Sobic008G088806 Sobic009G238850 Sobic009G238850 Sobic002G083900--Sobic009G238850 Sobic004G086700 Sobic004G086700 Sobic002G083900--Sobic004G086700 Sobic009G155250--Sobic001G002600 Sobic009G155250--Sobic010G237900 Sobic003G379200 Sobic003G379200 Sobic009G155250--Sobic003G379200 Sobic009G155250--Sobic001G119900 Sobic001G248100 Sobic001G248100 Sobic009G155250--Sobic001G248100 Sobic009G155250--Sobic002G052700 Sobic004G004900 Sobic004G004900 Sobic009G155250--Sobic004G004900 Sobic009G155250--Sobic002G425500 Sobic009G155250--Sobic008G051200 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic001G251100--Sobic004G257100 Sobic001G251100--Sobic003G379200 Sobic002G052700--Sobic001G251100 Sobic004G357400 Sobic004G357400 Sobic002G052700--Sobic004G357400 Sobic003G042400 Sobic003G042400 Sobic002G052700--Sobic003G042400 Sobic004G321700 Sobic004G321700 Sobic002G052700--Sobic004G321700 Sobic002G052700--Sobic001G393900 Sobic001G003500 Sobic001G003500 Sobic002G052700--Sobic001G003500 Sobic001G052400 Sobic001G052400 Sobic002G052700--Sobic001G052400 Sobic002G052700--Sobic003G379200 Sobic008G147200 Sobic008G147200 Sobic002G052700--Sobic008G147200
Octagon: transcription factors


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