Gene annotation
Transcriptome id Sobic.004G235300.1
Synonym Sb04g027815
Functional annotation mTERF family protein, expressed
UniProt C5XYQ2
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF39
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os02g51460.1 : mTERF family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS1A02G413100 , TraesCS1D02G420700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G155600 dnaJ domain containing protein, expressed -
2 Sobic.002G425500 ATPOT1, putative, expressed -
3 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
4 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
5 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
6 Sobic.001G002600 expressed protein -
7 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
8 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
9 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
10 Sobic.003G168100 BZIP protein, putative, expressed -
11 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
12 Sobic.004G004900 prenyltransferase, putative, expressed K14137: protein prenyltransferase alpha subunit repeat containing protein 1
13 Sobic.001G063700 expressed protein -
14 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
15 Sobic.008G088875 - -
16 Sobic.004G158400 AML1, putative, expressed -
17 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
18 Sobic.005G200800 homeobox domain containing protein, expressed -
19 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
20 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic004G235300 Sobic004G235300 Sobic004G155600 Sobic004G155600 Sobic004G235300--Sobic004G155600 Sobic002G425500 Sobic002G425500 Sobic004G235300--Sobic002G425500 Sobic001G461400 Sobic001G461400 Sobic004G235300--Sobic001G461400 Sobic010G237900 Sobic010G237900 Sobic004G235300--Sobic010G237900 Sobic006G080400 Sobic006G080400 Sobic004G235300--Sobic006G080400 Sobic001G002600 Sobic001G002600 Sobic004G235300--Sobic001G002600 Sobic001G501800 Sobic001G501800 Sobic004G235300--Sobic001G501800 Sobic001G151100 Sobic001G151100 Sobic004G235300--Sobic001G151100 Sobic001G275300 Sobic001G275300 Sobic004G235300--Sobic001G275300 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic004G155600--Sobic001G002600 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic002G425500--Sobic004G155600 Sobic001G063700 Sobic001G063700 Sobic001G461400--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic001G461400--Sobic003G416700 Sobic002G264200 Sobic002G264200 Sobic001G461400--Sobic002G264200 Sobic002G154000 Sobic002G154000 Sobic001G461400--Sobic002G154000 Sobic001G087600 Sobic001G087600 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic010G112100 Sobic010G112100 Sobic001G461400--Sobic010G112100 Sobic004G129300 Sobic004G129300 Sobic010G237900--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic010G237900--Sobic007G191700 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic010G237900--Sobic002G425500 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic006G080400--Sobic008G002500 Sobic006G080400--Sobic001G461400 Sobic006G080400--Sobic004G155600 Sobic002G405500 Sobic002G405500 Sobic006G080400--Sobic002G405500 Sobic006G080400--Sobic001G063700 Sobic006G080400--Sobic002G154000 Sobic006G080400--Sobic004G355800 Sobic006G040800 Sobic006G040800 Sobic006G080400--Sobic006G040800 Sobic006G080400--Sobic003G360400 Sobic001G002600--Sobic010G237900 Sobic001G002600--Sobic004G129300 Sobic001G002600--Sobic010G145800 Sobic001G002600--Sobic004G155600 Sobic001G002600--Sobic006G118700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900 Sobic002G043100 Sobic002G043100 Sobic001G501800--Sobic002G043100 Sobic001G501800--Sobic004G107200 Sobic001G501800--Sobic005G200800 Sobic001G501800--Sobic002G425500 Sobic003G409200 Sobic003G409200 Sobic001G501800--Sobic003G409200 Sobic001G501800--Sobic001G063700 Sobic003G101500 Sobic003G101500 Sobic001G501800--Sobic003G101500 Sobic001G501800--Sobic003G360400 Sobic001G346900 Sobic001G346900 Sobic001G501800--Sobic001G346900 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic006G088200 Sobic006G088200 Sobic001G275300--Sobic006G088200 Sobic003G214600 Sobic003G214600 Sobic001G275300--Sobic003G214600 Sobic007G000300 Sobic007G000300 Sobic001G275300--Sobic007G000300 Sobic003G095900 Sobic003G095900 Sobic001G275300--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic001G275300--Sobic006G056700 Sobic004G158400 Sobic004G158400 Sobic001G275300--Sobic004G158400 Sobic001G275300--Sobic001G058200 Sobic007G159900 Sobic007G159900 Sobic001G275300--Sobic007G159900 Sobic001G275300--Sobic005G167700
Octagon: transcription factors


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