Gene annotation
Transcriptome id Sobic.006G080400.2,Sobic.006G080400.1
Synonym UBP27
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1B6PKX0 , A0A1Z5RCZ5
Pfam PF13423 PF00443
Panther DB PTHR24006 PTHR24006:SF431
NCBI CDD -
KEGG Orthology K11851; ubiquitin carboxyl-terminal hydrolase 30
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT4G39370 : ubiquitin-specific protease 27
RAP-DB (Rice) LOC_Os04g34984.3,LOC_Os04g34984.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056624 , Zm00025a011402
Brachypodium -
Barley HORVU0Hr1G004730.1
Wheat TraesCS2D02G300900 , TraesCS2D02G300900 , TraesCS2D02G300900 , TraesCS2A02G302200 , TraesCS2A02G302200 , TraesCS2A02G302200 , TraesCS2A02G302200 , TraesCS2B02G318000 , TraesCS2B02G318000 , TraesCS2B02G318000 , TraesCS2B02G318000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G002500 RCD1, putative, expressed -
2 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
3 Sobic.004G155600 dnaJ domain containing protein, expressed -
4 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
5 Sobic.001G063700 expressed protein -
6 Sobic.002G154000 EDM2, putative, expressed -
7 Sobic.004G355800 expressed protein -
8 Sobic.006G040800 expressed protein -
9 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
10 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
11 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
12 Sobic.003G416700 homeobox domain containing protein, expressed -
13 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
14 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
15 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
16 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
17 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
18 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
19 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
20 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6


Gene co-expression network
sample Sobic006G080400 Sobic006G080400 Sobic008G002500 Sobic008G002500 Sobic006G080400--Sobic008G002500 Sobic001G461400 Sobic001G461400 Sobic006G080400--Sobic001G461400 Sobic004G155600 Sobic004G155600 Sobic006G080400--Sobic004G155600 Sobic002G405500 Sobic002G405500 Sobic006G080400--Sobic002G405500 Sobic001G063700 Sobic001G063700 Sobic006G080400--Sobic001G063700 Sobic002G154000 Sobic002G154000 Sobic006G080400--Sobic002G154000 Sobic004G355800 Sobic004G355800 Sobic006G080400--Sobic004G355800 Sobic006G040800 Sobic006G040800 Sobic006G080400--Sobic006G040800 Sobic003G360400 Sobic003G360400 Sobic006G080400--Sobic003G360400 Sobic008G002500--Sobic006G040800 Sobic008G002500--Sobic001G063700 Sobic001G354600 Sobic001G354600 Sobic008G002500--Sobic001G354600 Sobic008G002500--Sobic003G360400 Sobic009G088000 Sobic009G088000 Sobic008G002500--Sobic009G088000 Sobic003G188400 Sobic003G188400 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic001G433800 Sobic001G433800 Sobic008G002500--Sobic001G433800 Sobic004G332400 Sobic004G332400 Sobic008G002500--Sobic004G332400 Sobic001G461400--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic001G461400--Sobic003G416700 Sobic002G264200 Sobic002G264200 Sobic001G461400--Sobic002G264200 Sobic001G461400--Sobic002G154000 Sobic001G087600 Sobic001G087600 Sobic001G461400--Sobic001G087600 Sobic005G200800 Sobic005G200800 Sobic001G461400--Sobic005G200800 Sobic001G461400--Sobic003G360400 Sobic002G071500 Sobic002G071500 Sobic001G461400--Sobic002G071500 Sobic010G112100 Sobic010G112100 Sobic001G461400--Sobic010G112100 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic004G155600--Sobic006G080400 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600 Sobic002G405500--Sobic006G080400 Sobic007G077900 Sobic007G077900 Sobic002G405500--Sobic007G077900 Sobic010G219000 Sobic010G219000 Sobic002G405500--Sobic010G219000 Sobic007G019300 Sobic007G019300 Sobic002G405500--Sobic007G019300 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic001G536000 Sobic001G536000 Sobic002G405500--Sobic001G536000 Sobic010G228500 Sobic010G228500 Sobic002G405500--Sobic010G228500 Sobic001G453000 Sobic001G453000 Sobic002G405500--Sobic001G453000 Sobic001G063700--Sobic001G461400 Sobic001G063700--Sobic003G360400 Sobic001G063700--Sobic010G112100 Sobic001G063700--Sobic002G154000 Sobic001G063700--Sobic003G188400 Sobic001G063700--Sobic001G433800 Sobic009G256300 Sobic009G256300 Sobic001G063700--Sobic009G256300 Sobic001G063700--Sobic008G002500 Sobic001G063700--Sobic001G354600 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic005G200900 Sobic005G200900 Sobic004G355800--Sobic005G200900 Sobic004G355800--Sobic006G118700 Sobic004G355800--Sobic006G210000 Sobic004G355800--Sobic002G154000 Sobic004G355800--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic004G355800--Sobic005G191900 Sobic006G067600 Sobic006G067600 Sobic004G355800--Sobic006G067600 Sobic004G156500 Sobic004G156500 Sobic004G355800--Sobic004G156500 Sobic004G355800--Sobic008G002500 Sobic006G040800--Sobic008G002500 Sobic006G040800--Sobic001G063700 Sobic006G040800--Sobic004G332400 Sobic006G040800--Sobic009G088000 Sobic006G040800--Sobic003G360400 Sobic008G164600 Sobic008G164600 Sobic006G040800--Sobic008G164600 Sobic006G040800--Sobic001G354600 Sobic006G040800--Sobic001G433800 Sobic007G225100 Sobic007G225100 Sobic006G040800--Sobic007G225100 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300
Octagon: transcription factors


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