Gene annotation
Transcriptome id Sobic.005G200900.6,Sobic.005G200900.8,Sobic.005G200900.4,Sobic.005G200900.2,Sobic.005G200900.3,Sobic.005G200900.5,Sobic.005G200900.7,Sobic.005G200900.1
Synonym Sb05g025690, SCC3, ATSCC3
Functional annotation SCC3, putative, expressed
UniProt A0A1Z5RK08 , A0A1Z5RJK7 , A0A1Z5RJT8 , C5Y721
Pfam PF08514
Panther DB PTHR11199 PTHR11199:SF0
NCBI CDD KOG2011; Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3
KEGG Orthology K06671; STAG1_2, SCC3, cohesin complex subunit SA-1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47980 : sister-chromatid cohesion protein 3
RAP-DB (Rice) LOC_Os05g09620.1 : SCC3, putative, expressed
MaizeGDB (Corn) Zm00025a015920
Brachypodium KQJ87492 , KQJ87493 , KQJ87494
Barley HORVU4Hr1G031480.8 , HORVU4Hr1G031480.9 , HORVU4Hr1G031480.2 , HORVU4Hr1G031480.3 , HORVU4Hr1G031480.1 , HORVU4Hr1G031480.6 , HORVU4Hr1G031480.7 , HORVU4Hr1G031480.4 , HORVU4Hr1G031480.5 , HORVU4Hr1G031480.10 , HORVU4Hr1G031480.11
Wheat TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4D02G147700 , TraesCS4A02G158700 , TraesCS4A02G158700 , TraesCS4A02G158700 , TraesCS4A02G158700 , TraesCSU02G181400 , TraesCSU02G181400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G355800 expressed protein -
2 Sobic.002G154000 EDM2, putative, expressed -
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
5 Sobic.009G088000 expressed protein -
6 Sobic.006G118700 MYB family transcription factor, putative, expressed -
7 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
8 Sobic.004G156500 expressed protein -
9 Sobic.008G002500 RCD1, putative, expressed -
10 Sobic.010G001100 chromo domain containing protein, expressed -
11 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
12 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
13 Sobic.001G384000 expressed protein -
14 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
15 Sobic.005G191900 transporter family protein, putative, expressed -
16 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
17 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
18 Sobic.004G155600 dnaJ domain containing protein, expressed -
19 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
20 Sobic.009G166100 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic005G200900 Sobic005G200900 Sobic004G355800 Sobic004G355800 Sobic005G200900--Sobic004G355800 Sobic002G154000 Sobic002G154000 Sobic005G200900--Sobic002G154000 Sobic003G360400 Sobic003G360400 Sobic005G200900--Sobic003G360400 Sobic009G251500 Sobic009G251500 Sobic005G200900--Sobic009G251500 Sobic009G088000 Sobic009G088000 Sobic005G200900--Sobic009G088000 Sobic006G118700 Sobic006G118700 Sobic005G200900--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic005G200900--Sobic006G210000 Sobic004G156500 Sobic004G156500 Sobic005G200900--Sobic004G156500 Sobic008G002500 Sobic008G002500 Sobic005G200900--Sobic008G002500 Sobic004G355800--Sobic005G200900 Sobic004G355800--Sobic006G118700 Sobic004G355800--Sobic006G210000 Sobic004G355800--Sobic002G154000 Sobic004G155600 Sobic004G155600 Sobic004G355800--Sobic004G155600 Sobic005G191900 Sobic005G191900 Sobic004G355800--Sobic005G191900 Sobic006G067600 Sobic006G067600 Sobic004G355800--Sobic006G067600 Sobic004G355800--Sobic004G156500 Sobic004G355800--Sobic008G002500 Sobic002G154000--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic002G154000--Sobic003G416700 Sobic010G112100 Sobic010G112100 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic001G433800 Sobic001G433800 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic004G242400 Sobic004G242400 Sobic009G251500--Sobic004G242400 Sobic009G251500--Sobic003G389200 Sobic009G251500--Sobic009G256300 Sobic009G251500--Sobic003G360400 Sobic001G230000 Sobic001G230000 Sobic009G251500--Sobic001G230000 Sobic010G010700 Sobic010G010700 Sobic009G251500--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic009G251500--Sobic004G276400 Sobic002G133300 Sobic002G133300 Sobic009G251500--Sobic002G133300 Sobic001G457900 Sobic001G457900 Sobic009G251500--Sobic001G457900 Sobic009G088000--Sobic008G002500 Sobic006G040800 Sobic006G040800 Sobic009G088000--Sobic006G040800 Sobic002G126300 Sobic002G126300 Sobic009G088000--Sobic002G126300 Sobic003G294600 Sobic003G294600 Sobic009G088000--Sobic003G294600 Sobic003G164200 Sobic003G164200 Sobic009G088000--Sobic003G164200 Sobic009G088000--Sobic005G200900 Sobic002G137200 Sobic002G137200 Sobic009G088000--Sobic002G137200 Sobic009G088000--Sobic004G355800 Sobic010G236400 Sobic010G236400 Sobic009G088000--Sobic010G236400 Sobic007G183900 Sobic007G183900 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic006G210000--Sobic005G191900 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic001G134300 Sobic001G134300 Sobic004G156500--Sobic001G134300 Sobic001G306900 Sobic001G306900 Sobic004G156500--Sobic001G306900 Sobic004G156500--Sobic006G118700 Sobic004G156500--Sobic006G210000 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic008G002500--Sobic006G040800 Sobic008G002500--Sobic001G063700 Sobic008G002500--Sobic001G354600 Sobic008G002500--Sobic003G360400 Sobic008G002500--Sobic009G088000 Sobic003G188400 Sobic003G188400 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic008G002500--Sobic001G433800 Sobic004G332400 Sobic004G332400 Sobic008G002500--Sobic004G332400
Octagon: transcription factors


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