Gene annotation
Transcriptome id Sobic.002G366400.1
Synonym ATHDA5, Sb02g038550, HDA05, HDA5
Functional annotation histone deacetylase, putative, expressed
UniProt C5XDU1
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF102
NCBI CDD -
KEGG Orthology K11407; histone deacetylase 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61060 : histone deacetylase 5
RAP-DB (Rice) LOC_Os07g41090.1 : histone deacetylase, putative, expressed
MaizeGDB (Corn) Zm00025a015111
Brachypodium KQK15369
Barley HORVU1Hr1G066760.6 , HORVU1Hr1G066760.7 , HORVU1Hr1G066760.4 , HORVU1Hr1G066760.5 , HORVU1Hr1G066760.2 , HORVU1Hr1G066760.3 , HORVU1Hr1G066760.1 , HORVU1Hr1G066760.8 , HORVU1Hr1G066760.9 , HORVU1Hr1G066760.43 , HORVU1Hr1G066760.42 , HORVU1Hr1G066760.41 , HORVU1Hr1G066760.40 , HORVU1Hr1G066760.47 , HORVU1Hr1G066760.46 , HORVU1Hr1G066760.45 , HORVU1Hr1G066760.44 , HORVU1Hr1G066760.49 , HORVU1Hr1G066760.48 , HORVU2Hr1G032540.10 , HORVU2Hr1G032540.11 , HORVU1Hr1G066760.50 , HORVU1Hr1G066760.51 , HORVU1Hr1G066760.52 , HORVU1Hr1G066760.53 , HORVU1Hr1G066760.54 , HORVU1Hr1G066760.55 , HORVU1Hr1G066760.56 , HORVU1Hr1G066760.57 , HORVU1Hr1G066760.58 , HORVU1Hr1G066760.59 , HORVU1Hr1G066760.14 , HORVU1Hr1G066760.15 , HORVU1Hr1G066760.11 , HORVU2Hr1G032540.8 , HORVU2Hr1G032540.9 , HORVU2Hr1G032540.1 , HORVU2Hr1G032540.2 , HORVU2Hr1G032540.3 , HORVU2Hr1G032540.4 , HORVU2Hr1G032540.5 , HORVU2Hr1G032540.6 , HORVU2Hr1G032540.7 , HORVU1Hr1G066760.60 , HORVU1Hr1G066760.18 , HORVU1Hr1G066760.19 , HORVU1Hr1G066760.16 , HORVU1Hr1G066760.17 , HORVU1Hr1G066760.10 , HORVU1Hr1G066760.12 , HORVU1Hr1G066760.13 , HORVU1Hr1G066760.21 , HORVU1Hr1G066760.20 , HORVU1Hr1G066760.23 , HORVU1Hr1G066760.22 , HORVU1Hr1G066760.25 , HORVU1Hr1G066760.24 , HORVU1Hr1G066760.27 , HORVU1Hr1G066760.26 , HORVU1Hr1G066760.29 , HORVU1Hr1G066760.28 , HORVU1Hr1G066760.36 , HORVU1Hr1G066760.37 , HORVU1Hr1G066760.34 , HORVU1Hr1G066760.35 , HORVU1Hr1G066760.32 , HORVU1Hr1G066760.33 , HORVU1Hr1G066760.30 , HORVU1Hr1G066760.31 , HORVU1Hr1G066760.38 , HORVU1Hr1G066760.39
Wheat TraesCS1B02G329500 , TraesCS2A02G177100 , TraesCS1A02G317100 , TraesCS2D02G185200 , TraesCS1D02G317100 , TraesCS2B02G204100
Populus -


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cDNA sequences
Sobic.002G366400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
2 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
3 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
4 Sobic.006G118700 MYB family transcription factor, putative, expressed -
5 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
6 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
7 Sobic.007G183900 ubiquitin family protein, putative, expressed -
8 Sobic.003G266001 - -
9 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
10 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
11 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
12 Sobic.010G069100 expressed protein -
13 Sobic.001G313700 expressed protein -
14 Sobic.002G264200 RNA recognition motif containing protein, expressed -
15 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
16 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
17 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
18 Sobic.001G219900 expressed protein -
19 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
20 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1


Gene co-expression network
sample Sobic002G366400 Sobic002G366400 Sobic003G408600 Sobic003G408600 Sobic002G366400--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic002G366400--Sobic010G112100 Sobic007G159900 Sobic007G159900 Sobic002G366400--Sobic007G159900 Sobic006G118700 Sobic006G118700 Sobic002G366400--Sobic006G118700 Sobic003G360400 Sobic003G360400 Sobic002G366400--Sobic003G360400 Sobic002G045600 Sobic002G045600 Sobic002G366400--Sobic002G045600 Sobic007G183900 Sobic007G183900 Sobic002G366400--Sobic007G183900 Sobic003G266001 Sobic003G266001 Sobic002G366400--Sobic003G266001 Sobic001G354600 Sobic001G354600 Sobic002G366400--Sobic001G354600 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic007G159900--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic007G159900--Sobic004G158400 Sobic007G159900--Sobic002G366400 Sobic007G159900--Sobic010G112100 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic003G188400 Sobic003G188400 Sobic007G159900--Sobic003G188400 Sobic008G113100 Sobic008G113100 Sobic007G159900--Sobic008G113100 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic006G118700--Sobic002G366400 Sobic010G236400 Sobic010G236400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic007G183900--Sobic002G264200 Sobic001G493200 Sobic001G493200 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic003G266001--Sobic010G069100 Sobic003G266001--Sobic003G408600 Sobic004G072100 Sobic004G072100 Sobic003G266001--Sobic004G072100 Sobic004G021200 Sobic004G021200 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic003G266001--Sobic007G159900 Sobic001G354600--Sobic003G360400 Sobic001G354600--Sobic010G112100 Sobic001G354600--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic001G354600--Sobic004G048800 Sobic007G105100 Sobic007G105100 Sobic001G354600--Sobic007G105100 Sobic002G133300 Sobic002G133300 Sobic001G354600--Sobic002G133300 Sobic001G063700 Sobic001G063700 Sobic001G354600--Sobic001G063700 Sobic002G068100 Sobic002G068100 Sobic001G354600--Sobic002G068100 Sobic001G354600--Sobic009G044800
Octagon: transcription factors


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