Gene annotation
Transcriptome id Sobic.010G237900.1
Synonym Sb10g027920
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5Z8C2
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF393
NCBI CDD KOG1457; RNA binding protein (contains RRM repeats)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G42240 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os06g47300.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018211
Brachypodium -
Barley -
Wheat TraesCS7B02G342500 , TraesCS7B02G342500 , TraesCS7D02G432900 , TraesCS7D02G432900 , TraesCS7B02G342500 , TraesCS7A02G443800 , TraesCS7A02G443800
Populus -


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cDNA sequences
Sobic.010G237900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
2 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
3 Sobic.001G002600 expressed protein -
4 Sobic.007G084100 expressed protein -
5 Sobic.002G425500 ATPOT1, putative, expressed -
6 Sobic.006G014100 serine-rich 25 kDa antigen protein, putative, expressed -
7 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
8 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
9 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
11 Sobic.007G102700 - -
12 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
13 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
14 Sobic.006G096900 expressed protein -
15 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
16 Sobic.007G091600 proline rich protein 3, putative, expressed -
17 Sobic.007G183900 ubiquitin family protein, putative, expressed -
18 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
19 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
20 Sobic.004G158400 AML1, putative, expressed -


Gene co-expression network
sample Sobic010G237900 Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic010G237900--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic004G129300--Sobic010G237900 Sobic004G129300--Sobic007G191700 Sobic004G129300--Sobic001G002600 Sobic007G091600 Sobic007G091600 Sobic004G129300--Sobic007G091600 Sobic007G090430 Sobic007G090430 Sobic004G129300--Sobic007G090430 Sobic008G173100 Sobic008G173100 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic007G183300 Sobic007G183300 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300 Sobic007G191700--Sobic010G237900 Sobic007G191700--Sobic007G091600 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic001G002600--Sobic010G237900 Sobic001G002600--Sobic004G129300 Sobic001G002600--Sobic010G145800 Sobic004G155600 Sobic004G155600 Sobic001G002600--Sobic004G155600 Sobic001G002600--Sobic006G118700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900 Sobic007G084100--Sobic010G237900 Sobic005G160400 Sobic005G160400 Sobic007G084100--Sobic005G160400 Sobic003G122500 Sobic003G122500 Sobic007G084100--Sobic003G122500 Sobic007G084100--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic007G084100--Sobic001G114500 Sobic007G183900 Sobic007G183900 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic005G172500 Sobic005G172500 Sobic007G084100--Sobic005G172500 Sobic004G185800 Sobic004G185800 Sobic007G084100--Sobic004G185800 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic002G425500--Sobic007G183900 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic002G425500--Sobic004G155600 Sobic006G014100--Sobic004G155600 Sobic006G014100--Sobic010G237900 Sobic004G266900 Sobic004G266900 Sobic006G014100--Sobic004G266900 Sobic006G014100--Sobic007G191700 Sobic006G014100--Sobic001G395100 Sobic006G270600 Sobic006G270600 Sobic006G014100--Sobic006G270600 Sobic006G014100--Sobic001G002600 Sobic003G379200 Sobic003G379200 Sobic006G014100--Sobic003G379200 Sobic008G047300 Sobic008G047300 Sobic006G014100--Sobic008G047300 Sobic003G121300--Sobic001G114500 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic007G102700 Sobic007G102700 Sobic004G156800--Sobic007G102700 Sobic004G156800--Sobic010G237900 Sobic001G259000 Sobic001G259000 Sobic004G156800--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic004G156800--Sobic001G527300 Sobic004G156800--Sobic004G129300 Sobic004G156800--Sobic001G114500 Sobic004G156800--Sobic009G164000 Sobic010G007100 Sobic010G007100 Sobic004G156800--Sobic010G007100 Sobic006G204800 Sobic006G204800 Sobic004G156800--Sobic006G204800 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G140400 Sobic010G140400 Sobic010G145800--Sobic010G140400 Sobic010G145800--Sobic001G002600 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600
Octagon: transcription factors


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