Gene annotation
Transcriptome id Sobic.005G160400.2,Sobic.005G160400.1,Sobic.005G160400.3
Synonym RHF2A, Sb05g022230
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PST9
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF47 PTHR22763:SF47 PTHR22763
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K19043; E3 ubiquitin-protein ligase RHF
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding GO:0005515protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G22000 : RING-H2 group F2A
RAP-DB (Rice) LOC_Os11g36430.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015787 , Zm00025a033847
Brachypodium -
Barley HORVU4Hr1G034400.5 , HORVU4Hr1G034400.4 , HORVU4Hr1G034400.7 , HORVU4Hr1G034400.6 , HORVU4Hr1G034400.1 , HORVU4Hr1G034400.3 , HORVU4Hr1G034400.2 , HORVU4Hr1G034400.8
Wheat TraesCS4A02G165300 , TraesCSU02G068700 , TraesCS4A02G165300 , TraesCS4D02G158400 , TraesCS4D02G158400
Populus -


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cDNA sequences
Sobic.005G160400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
2 Sobic.007G084100 expressed protein -
3 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
4 Sobic.010G092300 N-rich protein, putative, expressed -
5 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
6 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
7 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
8 Sobic.006G121300 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
9 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
10 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
12 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
13 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
14 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
16 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
17 Sobic.009G049300 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
19 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic005G160400 Sobic005G160400 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic007G218000 Sobic007G218000 Sobic009G092400--Sobic007G218000 Sobic009G092400--Sobic005G160400 Sobic009G044800 Sobic009G044800 Sobic009G092400--Sobic009G044800 Sobic009G249700 Sobic009G249700 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic004G209700 Sobic004G209700 Sobic009G092400--Sobic004G209700 Sobic002G303600 Sobic002G303600 Sobic009G092400--Sobic002G303600 Sobic006G180000 Sobic006G180000 Sobic009G092400--Sobic006G180000 Sobic007G132100 Sobic007G132100 Sobic009G092400--Sobic007G132100 Sobic007G084100--Sobic010G237900 Sobic007G084100--Sobic005G160400 Sobic003G122500 Sobic003G122500 Sobic007G084100--Sobic003G122500 Sobic007G084100--Sobic001G473600 Sobic007G084100--Sobic001G114500 Sobic007G183900 Sobic007G183900 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic005G172500 Sobic005G172500 Sobic007G084100--Sobic005G172500 Sobic004G185800 Sobic004G185800 Sobic007G084100--Sobic004G185800 Sobic004G129300 Sobic004G129300 Sobic010G237900--Sobic004G129300 Sobic007G191700 Sobic007G191700 Sobic010G237900--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic010G237900--Sobic001G002600 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic003G340600 Sobic003G340600 Sobic010G092300--Sobic003G340600 Sobic010G092300--Sobic005G160400 Sobic010G092300--Sobic010G265300 Sobic003G264200 Sobic003G264200 Sobic010G092300--Sobic003G264200 Sobic002G167500 Sobic002G167500 Sobic010G092300--Sobic002G167500 Sobic001G019800 Sobic001G019800 Sobic010G092300--Sobic001G019800 Sobic009G162600 Sobic009G162600 Sobic010G092300--Sobic009G162600 Sobic007G078500 Sobic007G078500 Sobic010G092300--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic010G092300--Sobic001G080700 Sobic003G143200 Sobic003G143200 Sobic002G347000--Sobic003G143200 Sobic002G347000--Sobic005G160400 Sobic001G309400 Sobic001G309400 Sobic002G347000--Sobic001G309400 Sobic002G347000--Sobic006G180000 Sobic007G115200 Sobic007G115200 Sobic002G347000--Sobic007G115200 Sobic006G199200 Sobic006G199200 Sobic002G347000--Sobic006G199200 Sobic007G167900 Sobic007G167900 Sobic002G347000--Sobic007G167900 Sobic001G281600 Sobic001G281600 Sobic002G347000--Sobic001G281600 Sobic008G076800 Sobic008G076800 Sobic002G347000--Sobic008G076800 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic010G265300--Sobic005G160400 Sobic010G265300--Sobic010G092300 Sobic010G265300--Sobic005G172500 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic010G265300--Sobic007G084100 Sobic004G257100 Sobic004G257100 Sobic010G265300--Sobic004G257100 Sobic001G226700 Sobic001G226700 Sobic010G265300--Sobic001G226700 Sobic006G121300--Sobic001G395100 Sobic006G121300--Sobic002G034600 Sobic001G216100 Sobic001G216100 Sobic006G121300--Sobic001G216100 Sobic010G028300 Sobic010G028300 Sobic006G121300--Sobic010G028300 Sobic007G056500 Sobic007G056500 Sobic006G121300--Sobic007G056500 Sobic006G121300--Sobic001G473600 Sobic008G179700 Sobic008G179700 Sobic006G121300--Sobic008G179700 Sobic003G401100 Sobic003G401100 Sobic006G121300--Sobic003G401100 Sobic006G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic001G114500--Sobic003G132000 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G114500--Sobic001G473600 Sobic001G114500--Sobic007G084100 Sobic001G114500--Sobic005G160400 Sobic009G258400 Sobic009G258400 Sobic001G114500--Sobic009G258400 Sobic001G114500--Sobic004G156800
Octagon: transcription factors


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