Gene annotation
Transcriptome id Sobic.009G049300.1
Synonym Sb09g004190
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z0H8
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF59
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05545 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g06270.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a042989 , Zm00025a036901
Brachypodium KQK07413
Barley HORVU1Hr1G022130.3
Wheat TraesCS1D02G103800 , TraesCS1A02G095100 , TraesCS1B02G123100
Populus -


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cDNA sequences
Sobic.009G049300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
2 Sobic.007G078600 YT521-B, putative, expressed -
3 Sobic.006G096900 expressed protein -
4 Sobic.010G082700 expressed protein -
5 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
6 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
8 Sobic.002G121600 myb-like DNA-binding domain containing protein, expressed -
9 Sobic.007G159500 uncharacterized protein, YigZ family, putative, expressed -
10 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
11 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
12 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
13 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
14 Sobic.001G539500 SKP1, putative, expressed -
15 Sobic.001G497900 XS domain containing protein, expressed -
16 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
17 Sobic.003G071000 SLT1 protein, putative, expressed -
18 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
19 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.007G084100 expressed protein -


Gene co-expression network
sample Sobic009G049300 Sobic009G049300 Sobic005G160400 Sobic005G160400 Sobic009G049300--Sobic005G160400 Sobic007G078600 Sobic007G078600 Sobic009G049300--Sobic007G078600 Sobic006G096900 Sobic006G096900 Sobic009G049300--Sobic006G096900 Sobic010G082700 Sobic010G082700 Sobic009G049300--Sobic010G082700 Sobic001G080700 Sobic001G080700 Sobic009G049300--Sobic001G080700 Sobic010G021500 Sobic010G021500 Sobic009G049300--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic009G049300--Sobic007G136800 Sobic002G121600 Sobic002G121600 Sobic009G049300--Sobic002G121600 Sobic007G159500 Sobic007G159500 Sobic009G049300--Sobic007G159500 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic008G047800 Sobic008G047800 Sobic007G078600--Sobic008G047800 Sobic003G394300 Sobic003G394300 Sobic007G078600--Sobic003G394300 Sobic003G084700 Sobic003G084700 Sobic007G078600--Sobic003G084700 Sobic006G118700 Sobic006G118700 Sobic007G078600--Sobic006G118700 Sobic006G200600 Sobic006G200600 Sobic007G078600--Sobic006G200600 Sobic009G179700 Sobic009G179700 Sobic007G078600--Sobic009G179700 Sobic007G078500 Sobic007G078500 Sobic007G078600--Sobic007G078500 Sobic002G134200 Sobic002G134200 Sobic007G078600--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic007G078600--Sobic002G133400 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic003G360400 Sobic003G360400 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic001G433800 Sobic001G433800 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic010G082700--Sobic001G473600 Sobic010G082700--Sobic007G078600 Sobic003G071000 Sobic003G071000 Sobic010G082700--Sobic003G071000 Sobic010G082700--Sobic005G160400 Sobic010G082700--Sobic007G078500 Sobic010G082700--Sobic009G179700 Sobic010G082700--Sobic010G021500 Sobic003G298100 Sobic003G298100 Sobic010G082700--Sobic003G298100 Sobic010G082700--Sobic009G049300 Sobic001G392300 Sobic001G392300 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic003G398700 Sobic003G398700 Sobic010G021500--Sobic003G398700 Sobic010G167900 Sobic010G167900 Sobic010G021500--Sobic010G167900 Sobic008G113100 Sobic008G113100 Sobic010G021500--Sobic008G113100 Sobic010G021500--Sobic006G096900 Sobic001G456900 Sobic001G456900 Sobic010G021500--Sobic001G456900 Sobic010G149200 Sobic010G149200 Sobic010G021500--Sobic010G149200 Sobic005G027400 Sobic005G027400 Sobic010G021500--Sobic005G027400 Sobic005G100700 Sobic005G100700 Sobic010G021500--Sobic005G100700 Sobic003G221900 Sobic003G221900 Sobic010G021500--Sobic003G221900 Sobic007G136800--Sobic003G398700 Sobic010G126000 Sobic010G126000 Sobic007G136800--Sobic010G126000 Sobic003G168100 Sobic003G168100 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic006G031800 Sobic006G031800 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic001G043800 Sobic001G043800 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic001G356500 Sobic001G356500 Sobic002G121600--Sobic001G356500 Sobic009G191100 Sobic009G191100 Sobic002G121600--Sobic009G191100 Sobic002G121600--Sobic002G133400 Sobic003G148000 Sobic003G148000 Sobic002G121600--Sobic003G148000 Sobic002G343901 Sobic002G343901 Sobic002G121600--Sobic002G343901 Sobic002G121600--Sobic001G456900 Sobic003G332800 Sobic003G332800 Sobic002G121600--Sobic003G332800 Sobic007G065400 Sobic007G065400 Sobic002G121600--Sobic007G065400 Sobic002G121600--Sobic008G113100 Sobic002G350300 Sobic002G350300 Sobic007G159500--Sobic002G350300 Sobic007G159500--Sobic001G080700 Sobic007G159500--Sobic009G049300 Sobic007G159500--Sobic007G078500 Sobic004G121100 Sobic004G121100 Sobic007G159500--Sobic004G121100 Sobic002G110700 Sobic002G110700 Sobic007G159500--Sobic002G110700 Sobic004G094300 Sobic004G094300 Sobic007G159500--Sobic004G094300 Sobic007G159500--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic007G159500--Sobic007G166100
Octagon: transcription factors


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