Gene annotation
Transcriptome id Sobic.002G347000.2,Sobic.002G347000.1
Synonym Sb02g036960
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QF37 , A0A1B6QF28
Pfam PF00400
Panther DB PTHR22847
NCBI CDD KOG0643; Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) KOG1407WD40 repeat protein KOG0271Notchless-like WD40 repeat-containing protein KOG0265U5 snRNP-specific protein-like factor and related proteins
KEGG Orthology K14963; WDR5, SWD3, COMPASS component SWD3
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G02730 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g38430.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048459 , Zm00025a048460 , Zm00025a042883
Brachypodium KQK15624
Barley HORVU2Hr1G041020.1 , HORVU2Hr1G041020.3 , HORVU2Hr1G041020.2
Wheat TraesCS2D02G204900 , TraesCS2B02G224500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G347000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G143200 expressed protein -
2 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
3 Sobic.001G309400 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
4 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
5 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
6 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
7 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
8 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
9 Sobic.008G076800 expressed protein -
10 Sobic.006G200600 expressed protein -
11 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
13 Sobic.004G121100 expressed protein -
14 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
15 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
16 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
17 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
18 Sobic.003G443100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
19 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
20 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic002G347000 Sobic002G347000 Sobic003G143200 Sobic003G143200 Sobic002G347000--Sobic003G143200 Sobic005G160400 Sobic005G160400 Sobic002G347000--Sobic005G160400 Sobic001G309400 Sobic001G309400 Sobic002G347000--Sobic001G309400 Sobic006G180000 Sobic006G180000 Sobic002G347000--Sobic006G180000 Sobic007G115200 Sobic007G115200 Sobic002G347000--Sobic007G115200 Sobic006G199200 Sobic006G199200 Sobic002G347000--Sobic006G199200 Sobic007G167900 Sobic007G167900 Sobic002G347000--Sobic007G167900 Sobic001G281600 Sobic001G281600 Sobic002G347000--Sobic001G281600 Sobic008G076800 Sobic008G076800 Sobic002G347000--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic003G143200--Sobic004G092500 Sobic001G405600 Sobic001G405600 Sobic003G143200--Sobic001G405600 Sobic007G017800 Sobic007G017800 Sobic003G143200--Sobic007G017800 Sobic003G143200--Sobic002G347000 Sobic007G132100 Sobic007G132100 Sobic003G143200--Sobic007G132100 Sobic003G443100 Sobic003G443100 Sobic003G143200--Sobic003G443100 Sobic005G138300 Sobic005G138300 Sobic003G143200--Sobic005G138300 Sobic007G125000 Sobic007G125000 Sobic003G143200--Sobic007G125000 Sobic002G260400 Sobic002G260400 Sobic003G143200--Sobic002G260400 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic010G265300 Sobic010G265300 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic007G177000 Sobic007G177000 Sobic001G309400--Sobic007G177000 Sobic010G079900 Sobic010G079900 Sobic001G309400--Sobic010G079900 Sobic001G309400--Sobic007G115200 Sobic001G309400--Sobic002G347000 Sobic008G070500 Sobic008G070500 Sobic001G309400--Sobic008G070500 Sobic004G142900 Sobic004G142900 Sobic001G309400--Sobic004G142900 Sobic010G205800 Sobic010G205800 Sobic001G309400--Sobic010G205800 Sobic001G207000 Sobic001G207000 Sobic001G309400--Sobic001G207000 Sobic001G309400--Sobic006G199200 Sobic002G303600 Sobic002G303600 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic003G264100 Sobic003G264100 Sobic006G180000--Sobic003G264100 Sobic010G223300 Sobic010G223300 Sobic006G180000--Sobic010G223300 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic010G020400 Sobic010G020400 Sobic006G180000--Sobic010G020400 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic001G107500 Sobic001G107500 Sobic007G115200--Sobic001G107500 Sobic001G016000 Sobic001G016000 Sobic007G115200--Sobic001G016000 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic007G115200--Sobic002G347000 Sobic002G363600 Sobic002G363600 Sobic007G115200--Sobic002G363600 Sobic002G351900 Sobic002G351900 Sobic007G115200--Sobic002G351900 Sobic007G115200--Sobic001G281600 Sobic002G092300 Sobic002G092300 Sobic007G115200--Sobic002G092300 Sobic003G195000 Sobic003G195000 Sobic006G199200--Sobic003G195000 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic005G027400 Sobic005G027400 Sobic006G199200--Sobic005G027400 Sobic006G199200--Sobic010G079900 Sobic001G121200 Sobic001G121200 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic001G289800 Sobic001G289800 Sobic006G199200--Sobic001G289800 Sobic001G085100 Sobic001G085100 Sobic007G167900--Sobic001G085100 Sobic009G192000 Sobic009G192000 Sobic007G167900--Sobic009G192000 Sobic007G167900--Sobic004G092500 Sobic001G206900 Sobic001G206900 Sobic007G167900--Sobic001G206900 Sobic007G167900--Sobic002G047700 Sobic006G101700 Sobic006G101700 Sobic007G167900--Sobic006G101700 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic008G076800--Sobic007G078500 Sobic008G076800--Sobic002G347000 Sobic008G076800--Sobic010G265300 Sobic008G076800--Sobic001G207000 Sobic003G053800 Sobic003G053800 Sobic008G076800--Sobic003G053800 Sobic008G076800--Sobic001G121200 Sobic010G251000 Sobic010G251000 Sobic008G076800--Sobic010G251000 Sobic008G076800--Sobic001G085100 Sobic008G076800--Sobic001G281600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.