Gene annotation
Transcriptome id Sobic.001G539500.3,Sobic.001G539500.1,Sobic.001G539500.2
Synonym ASK21, Sb01g050170, SK21
Functional annotation SKP1, putative, expressed
UniProt C5WMR9 , C5WMQ7
Pfam PF01466
Panther DB PTHR11165 PTHR11165:SF62
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology -
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT3G61415 : SKP1-like 21
RAP-DB (Rice) LOC_Os03g01660.1 : SKP1, putative, expressed
MaizeGDB (Corn) Zm00025a000140 , Zm00025a054864 , Zm00025a053571 , Zm00025a029911
Brachypodium KQK24093 , PNT78360 , PNT78361
Barley HORVU4Hr1G086820.8 , HORVU4Hr1G086820.9 , HORVU4Hr1G086820.6 , HORVU4Hr1G086820.7 , HORVU4Hr1G086820.4 , HORVU4Hr1G086820.5 , HORVU4Hr1G086820.2 , HORVU4Hr1G086820.3 , HORVU4Hr1G086820.1 , HORVU4Hr1G086820.14 , HORVU4Hr1G086820.17 , HORVU4Hr1G086820.10 , HORVU4Hr1G086820.11 , HORVU4Hr1G086820.12 , HORVU4Hr1G086820.13 , HORVU4Hr1G086820.18 , HORVU4Hr1G086820.19 , HORVU4Hr1G086820.15 , HORVU4Hr1G086820.16 , HORVU4Hr1G086820.29 , HORVU4Hr1G086820.28 , HORVU4Hr1G086820.21 , HORVU4Hr1G086820.20 , HORVU4Hr1G086820.23 , HORVU4Hr1G086820.22 , HORVU4Hr1G086820.25 , HORVU4Hr1G086820.24 , HORVU4Hr1G086820.27 , HORVU4Hr1G086820.26 , HORVU4Hr1G086820.31
Wheat TraesCS4B02G362000 , TraesCS5A02G530000 , TraesCS5A02G530000 , TraesCS5A02G530000 , TraesCS5A02G530000 , TraesCS4D02G355000 , TraesCS4D02G355000 , TraesCS4D02G355000 , TraesCS4D02G355000 , TraesCS4B02G362000 , TraesCS4B02G362000 , TraesCS4D02G355000
Populus -


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cDNA sequences
Sobic.001G539500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
2 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
3 Sobic.006G096900 expressed protein -
4 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
5 Sobic.007G084100 expressed protein -
6 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
7 Sobic.004G353800 expressed protein -
8 Sobic.007G052300 expressed protein -
9 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.008G070800 expressed protein -
11 Sobic.009G049300 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
13 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
14 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
15 Sobic.001G332500 WRKY81, expressed -
16 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
17 Sobic.002G117000 expressed protein -
18 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
19 Sobic.001G244300 GA19388-PA, putative, expressed K10768: alkylated DNA repair protein alkB homolog 6
20 Sobic.003G340600 VHS and GAT domain containing protein, expressed -


Gene co-expression network
sample Sobic001G539500 Sobic001G539500 Sobic005G160400 Sobic005G160400 Sobic001G539500--Sobic005G160400 Sobic010G265300 Sobic010G265300 Sobic001G539500--Sobic010G265300 Sobic006G096900 Sobic006G096900 Sobic001G539500--Sobic006G096900 Sobic001G080700 Sobic001G080700 Sobic001G539500--Sobic001G080700 Sobic007G084100 Sobic007G084100 Sobic001G539500--Sobic007G084100 Sobic007G009700 Sobic007G009700 Sobic001G539500--Sobic007G009700 Sobic004G353800 Sobic004G353800 Sobic001G539500--Sobic004G353800 Sobic007G052300 Sobic007G052300 Sobic001G539500--Sobic007G052300 Sobic010G021500 Sobic010G021500 Sobic001G539500--Sobic010G021500 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic010G265300--Sobic005G160400 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic010G265300--Sobic007G084100 Sobic004G257100 Sobic004G257100 Sobic010G265300--Sobic004G257100 Sobic001G226700 Sobic001G226700 Sobic010G265300--Sobic001G226700 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic003G360400 Sobic003G360400 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic001G433800 Sobic001G433800 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic007G084100--Sobic010G237900 Sobic007G084100--Sobic005G160400 Sobic003G122500 Sobic003G122500 Sobic007G084100--Sobic003G122500 Sobic007G084100--Sobic001G473600 Sobic007G084100--Sobic001G114500 Sobic007G183900 Sobic007G183900 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic007G084100--Sobic005G172500 Sobic004G185800 Sobic004G185800 Sobic007G084100--Sobic004G185800 Sobic007G009700--Sobic009G044800 Sobic001G088100 Sobic001G088100 Sobic007G009700--Sobic001G088100 Sobic001G227400 Sobic001G227400 Sobic007G009700--Sobic001G227400 Sobic007G009700--Sobic001G473600 Sobic007G009700--Sobic006G096900 Sobic007G009700--Sobic003G360400 Sobic007G009700--Sobic003G352200 Sobic001G025000 Sobic001G025000 Sobic007G009700--Sobic001G025000 Sobic003G379200 Sobic003G379200 Sobic007G009700--Sobic003G379200 Sobic004G353800--Sobic001G539500 Sobic006G185100 Sobic006G185100 Sobic004G353800--Sobic006G185100 Sobic004G353800--Sobic007G052300 Sobic002G121600 Sobic002G121600 Sobic004G353800--Sobic002G121600 Sobic001G178600 Sobic001G178600 Sobic004G353800--Sobic001G178600 Sobic005G100700 Sobic005G100700 Sobic004G353800--Sobic005G100700 Sobic004G353800--Sobic007G009700 Sobic004G353800--Sobic009G044800 Sobic004G353800--Sobic010G237900 Sobic007G052300--Sobic001G080700 Sobic007G052300--Sobic007G009700 Sobic007G052300--Sobic001G332500 Sobic007G052300--Sobic003G264200 Sobic007G052300--Sobic003G352200 Sobic003G253600 Sobic003G253600 Sobic007G052300--Sobic003G253600 Sobic010G074300 Sobic010G074300 Sobic007G052300--Sobic010G074300 Sobic003G316500 Sobic003G316500 Sobic007G052300--Sobic003G316500 Sobic007G052300--Sobic009G222500 Sobic003G398700 Sobic003G398700 Sobic010G021500--Sobic003G398700 Sobic010G167900 Sobic010G167900 Sobic010G021500--Sobic010G167900 Sobic008G113100 Sobic008G113100 Sobic010G021500--Sobic008G113100 Sobic010G021500--Sobic006G096900 Sobic001G456900 Sobic001G456900 Sobic010G021500--Sobic001G456900 Sobic010G149200 Sobic010G149200 Sobic010G021500--Sobic010G149200 Sobic005G027400 Sobic005G027400 Sobic010G021500--Sobic005G027400 Sobic010G021500--Sobic005G100700 Sobic003G221900 Sobic003G221900 Sobic010G021500--Sobic003G221900
Octagon: transcription factors


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