Gene annotation
Transcriptome id Sobic.010G265300.1,Sobic.010G265300.2
Synonym Sb10g030060
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A194YLQ3 , A0A194YLQ7
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF20
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT4G27680 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g50050.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041724 , Zm00025a018478
Brachypodium KQK17533 , KQK17532
Barley HORVU0Hr1G021880.1 , HORVU7Hr1G091480.2 , HORVU7Hr1G091480.1
Wheat TraesCS7D02G381400 , TraesCS7D02G381400 , TraesCS7B02G287800 , TraesCS7A02G384900
Populus -


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cDNA sequences
Sobic.010G265300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G120500 toc64, putative, expressed -
2 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
3 Sobic.010G092300 N-rich protein, putative, expressed -
4 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
5 Sobic.008G076800 expressed protein -
6 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
7 Sobic.007G084100 expressed protein -
8 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
9 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
10 Sobic.002G167500 expressed protein -
11 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
12 Sobic.004G185800 expressed protein -
13 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
14 Sobic.003G289500 selenium-binding protein, related, putative, expressed -
15 Sobic.003G169600 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
16 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
17 Sobic.001G402500 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
18 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.004G040900 CPuORF14 - conserved peptide uORF-containing transcript, expressed K03262: translation initiation factor 5
20 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha


Gene co-expression network
sample Sobic010G265300 Sobic010G265300 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic005G160400 Sobic005G160400 Sobic010G265300--Sobic005G160400 Sobic010G092300 Sobic010G092300 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic007G084100 Sobic007G084100 Sobic010G265300--Sobic007G084100 Sobic004G257100 Sobic004G257100 Sobic010G265300--Sobic004G257100 Sobic001G226700 Sobic001G226700 Sobic010G265300--Sobic001G226700 Sobic001G120500--Sobic010G265300 Sobic001G120500--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic001G120500--Sobic001G244300 Sobic001G493200 Sobic001G493200 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic008G051200 Sobic008G051200 Sobic001G120500--Sobic008G051200 Sobic009G056200 Sobic009G056200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic003G340600 Sobic003G340600 Sobic010G092300--Sobic003G340600 Sobic010G092300--Sobic005G160400 Sobic010G092300--Sobic010G265300 Sobic003G264200 Sobic003G264200 Sobic010G092300--Sobic003G264200 Sobic002G167500 Sobic002G167500 Sobic010G092300--Sobic002G167500 Sobic001G019800 Sobic001G019800 Sobic010G092300--Sobic001G019800 Sobic009G162600 Sobic009G162600 Sobic010G092300--Sobic009G162600 Sobic007G078500 Sobic007G078500 Sobic010G092300--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic010G092300--Sobic001G080700 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic005G172500--Sobic009G056200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic005G172500--Sobic004G257100 Sobic008G076800--Sobic007G078500 Sobic008G076800--Sobic002G347000 Sobic008G076800--Sobic010G265300 Sobic001G207000 Sobic001G207000 Sobic008G076800--Sobic001G207000 Sobic003G053800 Sobic003G053800 Sobic008G076800--Sobic003G053800 Sobic001G121200 Sobic001G121200 Sobic008G076800--Sobic001G121200 Sobic010G251000 Sobic010G251000 Sobic008G076800--Sobic010G251000 Sobic001G085100 Sobic001G085100 Sobic008G076800--Sobic001G085100 Sobic001G281600 Sobic001G281600 Sobic008G076800--Sobic001G281600 Sobic007G132100 Sobic007G132100 Sobic004G092500--Sobic007G132100 Sobic004G092500--Sobic001G493200 Sobic010G223300 Sobic010G223300 Sobic004G092500--Sobic010G223300 Sobic003G143200 Sobic003G143200 Sobic004G092500--Sobic003G143200 Sobic010G020400 Sobic010G020400 Sobic004G092500--Sobic010G020400 Sobic004G092500--Sobic004G257100 Sobic004G039600 Sobic004G039600 Sobic004G092500--Sobic004G039600 Sobic006G077200 Sobic006G077200 Sobic004G092500--Sobic006G077200 Sobic007G167900 Sobic007G167900 Sobic004G092500--Sobic007G167900 Sobic007G084100--Sobic010G237900 Sobic007G084100--Sobic005G160400 Sobic003G122500 Sobic003G122500 Sobic007G084100--Sobic003G122500 Sobic007G084100--Sobic001G473600 Sobic007G084100--Sobic001G114500 Sobic007G183900 Sobic007G183900 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic007G084100--Sobic005G172500 Sobic004G185800 Sobic004G185800 Sobic007G084100--Sobic004G185800 Sobic004G257100--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic004G257100--Sobic001G251100 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic002G294800 Sobic002G294800 Sobic001G226700--Sobic002G294800 Sobic002G134600 Sobic002G134600 Sobic001G226700--Sobic002G134600 Sobic001G226700--Sobic010G265300 Sobic001G362200 Sobic001G362200 Sobic001G226700--Sobic001G362200 Sobic008G046500 Sobic008G046500 Sobic001G226700--Sobic008G046500 Sobic007G165900 Sobic007G165900 Sobic001G226700--Sobic007G165900 Sobic004G246900 Sobic004G246900 Sobic001G226700--Sobic004G246900 Sobic006G032900 Sobic006G032900 Sobic001G226700--Sobic006G032900 Sobic010G143800 Sobic010G143800 Sobic001G226700--Sobic010G143800
Octagon: transcription factors


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