Gene annotation
Transcriptome id Sobic.001G226700.1
Synonym Sb01g019860
Functional annotation WD repeat-containing protein, putative, expressed
UniProt C5WZD7
Pfam PF00400
Panther DB PTHR22838
NCBI CDD KOG0293; WD40 repeat-containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G43920 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g19210.1 : WD repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006670
Brachypodium KQJ96995
Barley HORVU1Hr1G038880.2 , HORVU1Hr1G038880.5 , HORVU1Hr1G038880.6 , HORVU1Hr1G038880.1 , HORVU1Hr1G038880.3 , HORVU1Hr1G038880.7 , HORVU1Hr1G038880.8
Wheat TraesCS1D02G145000 , TraesCS1B02G164700
Populus -


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cDNA sequences
Sobic.001G226700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
2 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
3 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
4 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
5 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
6 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
7 Sobic.004G246900 ankyrin repeat-containing protein, putative, expressed -
8 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -
9 Sobic.010G143800 expressed protein -
10 Sobic.002G211800 AT-rich interaction region, putative, expressed -
11 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
12 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
13 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.008G080200 leucine-rich repeat family protein, putative, expressed -
15 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
16 Sobic.010G223700 MYB transcription factor, putative, expressed -
17 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
18 Sobic.010G076300 - -
19 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
20 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase


Gene co-expression network
sample Sobic001G226700 Sobic001G226700 Sobic002G294800 Sobic002G294800 Sobic001G226700--Sobic002G294800 Sobic002G134600 Sobic002G134600 Sobic001G226700--Sobic002G134600 Sobic010G265300 Sobic010G265300 Sobic001G226700--Sobic010G265300 Sobic001G362200 Sobic001G362200 Sobic001G226700--Sobic001G362200 Sobic008G046500 Sobic008G046500 Sobic001G226700--Sobic008G046500 Sobic007G165900 Sobic007G165900 Sobic001G226700--Sobic007G165900 Sobic004G246900 Sobic004G246900 Sobic001G226700--Sobic004G246900 Sobic006G032900 Sobic006G032900 Sobic001G226700--Sobic006G032900 Sobic010G143800 Sobic010G143800 Sobic001G226700--Sobic010G143800 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic007G006900 Sobic007G006900 Sobic002G134600--Sobic007G006900 Sobic002G134600--Sobic001G226700 Sobic001G425800 Sobic001G425800 Sobic002G134600--Sobic001G425800 Sobic002G134600--Sobic002G294800 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic005G160400 Sobic005G160400 Sobic010G265300--Sobic005G160400 Sobic010G092300 Sobic010G092300 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic007G084100 Sobic007G084100 Sobic010G265300--Sobic007G084100 Sobic004G257100 Sobic004G257100 Sobic010G265300--Sobic004G257100 Sobic010G265300--Sobic001G226700 Sobic003G332500 Sobic003G332500 Sobic001G362200--Sobic003G332500 Sobic003G109700 Sobic003G109700 Sobic001G362200--Sobic003G109700 Sobic001G362200--Sobic006G032900 Sobic001G102700 Sobic001G102700 Sobic001G362200--Sobic001G102700 Sobic001G515000 Sobic001G515000 Sobic001G362200--Sobic001G515000 Sobic004G192200 Sobic004G192200 Sobic001G362200--Sobic004G192200 Sobic004G072100 Sobic004G072100 Sobic001G362200--Sobic004G072100 Sobic001G362200--Sobic002G134600 Sobic007G183900 Sobic007G183900 Sobic001G362200--Sobic007G183900 Sobic001G007000 Sobic001G007000 Sobic008G046500--Sobic001G007000 Sobic006G200600 Sobic006G200600 Sobic008G046500--Sobic006G200600 Sobic008G046500--Sobic001G389100 Sobic007G093800 Sobic007G093800 Sobic008G046500--Sobic007G093800 Sobic010G251000 Sobic010G251000 Sobic008G046500--Sobic010G251000 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic009G068500 Sobic009G068500 Sobic008G046500--Sobic009G068500 Sobic003G102400 Sobic003G102400 Sobic008G046500--Sobic003G102400 Sobic007G165900--Sobic004G257100 Sobic006G261400 Sobic006G261400 Sobic007G165900--Sobic006G261400 Sobic007G165900--Sobic008G046500 Sobic004G131800 Sobic004G131800 Sobic007G165900--Sobic004G131800 Sobic006G127600 Sobic006G127600 Sobic007G165900--Sobic006G127600 Sobic001G361300 Sobic001G361300 Sobic007G165900--Sobic001G361300 Sobic007G165900--Sobic001G226700 Sobic001G251100 Sobic001G251100 Sobic007G165900--Sobic001G251100 Sobic010G009800 Sobic010G009800 Sobic007G165900--Sobic010G009800 Sobic010G078900 Sobic010G078900 Sobic004G246900--Sobic010G078900 Sobic004G246900--Sobic001G102700 Sobic004G246900--Sobic002G134600 Sobic004G246900--Sobic001G226700 Sobic010G079900 Sobic010G079900 Sobic004G246900--Sobic010G079900 Sobic001G088100 Sobic001G088100 Sobic004G246900--Sobic001G088100 Sobic004G246900--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic004G246900--Sobic010G021500 Sobic005G084400 Sobic005G084400 Sobic004G246900--Sobic005G084400 Sobic006G032900--Sobic001G362200 Sobic006G032900--Sobic003G109700 Sobic001G518400 Sobic001G518400 Sobic006G032900--Sobic001G518400 Sobic002G317300 Sobic002G317300 Sobic006G032900--Sobic002G317300 Sobic006G032900--Sobic001G226700 Sobic008G083000 Sobic008G083000 Sobic006G032900--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic006G032900--Sobic003G401100 Sobic006G032900--Sobic001G102700 Sobic009G103600 Sobic009G103600 Sobic006G032900--Sobic009G103600 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic007G161000 Sobic007G161000 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic001G365900 Sobic001G365900 Sobic010G143800--Sobic001G365900 Sobic010G143800--Sobic002G294800 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700
Octagon: transcription factors


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