Gene annotation
Transcriptome id Sobic.001G425800.2,Sobic.001G425800.3,Sobic.001G425800.1
Synonym Sb01g040020
Functional annotation src homology-3 domain protein 3, putative, expressed
UniProt A0A1Z5SAS8 , C5WQ41
Pfam PF03114 PF14604
Panther DB PTHR10663 PTHR10663:SF147
NCBI CDD KOG1118; Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation
KEGG Orthology -
Gene Ontology GO:0005737; cytoplasm GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G31440 : SH3 domain-containing protein
RAP-DB (Rice) LOC_Os03g16000.1 : src homology-3 domain protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a001760
Brachypodium KQK22415
Barley HORVU4Hr1G060770.2 , HORVU4Hr1G060770.3 , HORVU4Hr1G060770.1 , HORVU4Hr1G060770.6 , HORVU4Hr1G060770.7 , HORVU4Hr1G060770.4 , HORVU4Hr1G060770.5
Wheat TraesCS4A02G092400 , TraesCS4B02G211900 , TraesCS4D02G212700
Populus -


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cDNA sequences
Sobic.001G425800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
2 Sobic.010G223700 MYB transcription factor, putative, expressed -
3 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
4 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
5 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
6 Sobic.001G226700 WD repeat-containing protein, putative, expressed -
7 Sobic.002G257200 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
8 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
9 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
10 Sobic.004G226600 expressed protein -
11 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
12 Sobic.003G328600 proline-rich family protein, putative, expressed -
13 Sobic.007G019800 expressed protein -
14 Sobic.004G286500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
15 Sobic.003G309200 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
16 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
17 Sobic.010G068500 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.004G291000 scarecrow, putative, expressed -
19 Sobic.001G154500 tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
20 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G425800 Sobic001G425800 Sobic002G134600 Sobic002G134600 Sobic001G425800--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic001G425800--Sobic010G223700 Sobic007G006900 Sobic007G006900 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic010G249100 Sobic010G249100 Sobic001G425800--Sobic010G249100 Sobic001G226700 Sobic001G226700 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic004G146800 Sobic004G146800 Sobic001G425800--Sobic004G146800 Sobic008G124900 Sobic008G124900 Sobic001G425800--Sobic008G124900 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic002G134600--Sobic007G006900 Sobic002G134600--Sobic001G226700 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic001G362200 Sobic001G362200 Sobic002G134600--Sobic001G362200 Sobic009G219000 Sobic009G219000 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300 Sobic010G223700--Sobic003G309200 Sobic003G221900 Sobic003G221900 Sobic010G223700--Sobic003G221900 Sobic010G223700--Sobic001G122832 Sobic010G025300 Sobic010G025300 Sobic010G223700--Sobic010G025300 Sobic010G223700--Sobic001G425800 Sobic001G389100 Sobic001G389100 Sobic010G223700--Sobic001G389100 Sobic004G117900 Sobic004G117900 Sobic010G223700--Sobic004G117900 Sobic003G411900 Sobic003G411900 Sobic010G223700--Sobic003G411900 Sobic003G131400 Sobic003G131400 Sobic010G223700--Sobic003G131400 Sobic007G006900--Sobic002G134600 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic007G006900--Sobic010G249100 Sobic002G067600 Sobic002G067600 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic001G007000 Sobic001G007000 Sobic008G046500--Sobic001G007000 Sobic006G200600 Sobic006G200600 Sobic008G046500--Sobic006G200600 Sobic008G046500--Sobic001G389100 Sobic007G093800 Sobic007G093800 Sobic008G046500--Sobic007G093800 Sobic010G251000 Sobic010G251000 Sobic008G046500--Sobic010G251000 Sobic004G092500 Sobic004G092500 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic009G068500 Sobic009G068500 Sobic008G046500--Sobic009G068500 Sobic003G102400 Sobic003G102400 Sobic008G046500--Sobic003G102400 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic010G249100--Sobic008G124900 Sobic001G392300 Sobic001G392300 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic001G226700--Sobic002G294800 Sobic001G226700--Sobic002G134600 Sobic010G265300 Sobic010G265300 Sobic001G226700--Sobic010G265300 Sobic001G226700--Sobic001G362200 Sobic001G226700--Sobic008G046500 Sobic007G165900 Sobic007G165900 Sobic001G226700--Sobic007G165900 Sobic004G246900 Sobic004G246900 Sobic001G226700--Sobic004G246900 Sobic006G032900 Sobic006G032900 Sobic001G226700--Sobic006G032900 Sobic010G143800 Sobic010G143800 Sobic001G226700--Sobic010G143800 Sobic002G257200--Sobic001G425800 Sobic005G158300 Sobic005G158300 Sobic002G257200--Sobic005G158300 Sobic004G226600 Sobic004G226600 Sobic002G257200--Sobic004G226600 Sobic003G316700 Sobic003G316700 Sobic002G257200--Sobic003G316700 Sobic010G009800 Sobic010G009800 Sobic002G257200--Sobic010G009800 Sobic004G316700 Sobic004G316700 Sobic002G257200--Sobic004G316700 Sobic004G325600 Sobic004G325600 Sobic002G257200--Sobic004G325600 Sobic002G257200--Sobic004G286500 Sobic003G273500 Sobic003G273500 Sobic002G257200--Sobic003G273500 Sobic001G421900 Sobic001G421900 Sobic004G146800--Sobic001G421900 Sobic004G146800--Sobic001G425800 Sobic001G358000 Sobic001G358000 Sobic004G146800--Sobic001G358000 Sobic001G472600 Sobic001G472600 Sobic004G146800--Sobic001G472600 Sobic005G026100 Sobic005G026100 Sobic004G146800--Sobic005G026100 Sobic004G146800--Sobic010G249100 Sobic009G165800 Sobic009G165800 Sobic004G146800--Sobic009G165800 Sobic007G019800 Sobic007G019800 Sobic004G146800--Sobic007G019800 Sobic006G209400 Sobic006G209400 Sobic004G146800--Sobic006G209400 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic010G278200 Sobic010G278200 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic008G124900--Sobic010G249100 Sobic008G124900--Sobic009G068500
Octagon: transcription factors


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