Gene annotation
Transcriptome id Sobic.004G146800.1
Synonym ATPUB9, Sb04g019280, PUB9
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
spotted leaf 11, putative, expressed
UniProt C5XRR9
Pfam PF00514 PF04564
Panther DB PTHR23315 PTHR23315:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G07360 : plant U-box 9
RAP-DB (Rice) LOC_Os02g28720.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a020340 , Zm00025a020339
Brachypodium KQJ99501
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G146800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G421900 SCARECROW, putative, expressed -
2 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
3 Sobic.001G358000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
4 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
5 Sobic.005G026100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydroxymethylglutaryl-CoA lyase, putative, expressed K01640: E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase
6 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
7 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
8 Sobic.007G019800 expressed protein -
9 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
10 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
11 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
12 Sobic.001G193300 TBC domain containing protein, expressed -
13 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
14 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
15 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -
16 Sobic.010G223700 MYB transcription factor, putative, expressed -
17 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
18 Sobic.001G421300 protein kinase APK1A, chloroplast precursor, putative, expressed -
19 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
20 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1


Gene co-expression network
sample Sobic004G146800 Sobic004G146800 Sobic001G421900 Sobic001G421900 Sobic004G146800--Sobic001G421900 Sobic001G425800 Sobic001G425800 Sobic004G146800--Sobic001G425800 Sobic001G358000 Sobic001G358000 Sobic004G146800--Sobic001G358000 Sobic001G472600 Sobic001G472600 Sobic004G146800--Sobic001G472600 Sobic005G026100 Sobic005G026100 Sobic004G146800--Sobic005G026100 Sobic010G249100 Sobic010G249100 Sobic004G146800--Sobic010G249100 Sobic009G165800 Sobic009G165800 Sobic004G146800--Sobic009G165800 Sobic007G019800 Sobic007G019800 Sobic004G146800--Sobic007G019800 Sobic006G209400 Sobic006G209400 Sobic004G146800--Sobic006G209400 Sobic001G421900--Sobic004G146800 Sobic001G297500 Sobic001G297500 Sobic001G421900--Sobic001G297500 Sobic001G522600 Sobic001G522600 Sobic001G421900--Sobic001G522600 Sobic001G010300 Sobic001G010300 Sobic001G421900--Sobic001G010300 Sobic002G126500 Sobic002G126500 Sobic001G421900--Sobic002G126500 Sobic001G421900--Sobic010G249100 Sobic001G421900--Sobic001G472600 Sobic002G215100 Sobic002G215100 Sobic001G421900--Sobic002G215100 Sobic004G040350 Sobic004G040350 Sobic001G421900--Sobic004G040350 Sobic002G134600 Sobic002G134600 Sobic001G425800--Sobic002G134600 Sobic010G223700 Sobic010G223700 Sobic001G425800--Sobic010G223700 Sobic007G006900 Sobic007G006900 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic001G425800--Sobic010G249100 Sobic001G226700 Sobic001G226700 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic001G425800--Sobic004G146800 Sobic008G124900 Sobic008G124900 Sobic001G425800--Sobic008G124900 Sobic001G358000--Sobic009G165800 Sobic004G353200 Sobic004G353200 Sobic001G358000--Sobic004G353200 Sobic001G358000--Sobic004G146800 Sobic001G358000--Sobic010G223700 Sobic004G121100 Sobic004G121100 Sobic001G358000--Sobic004G121100 Sobic001G113000 Sobic001G113000 Sobic001G358000--Sobic001G113000 Sobic001G080700 Sobic001G080700 Sobic001G358000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic001G358000--Sobic006G200600 Sobic001G358000--Sobic007G019800 Sobic001G472600--Sobic007G019800 Sobic001G472600--Sobic002G215100 Sobic001G421300 Sobic001G421300 Sobic001G472600--Sobic001G421300 Sobic006G109300 Sobic006G109300 Sobic001G472600--Sobic006G109300 Sobic002G262600 Sobic002G262600 Sobic001G472600--Sobic002G262600 Sobic003G345400 Sobic003G345400 Sobic001G472600--Sobic003G345400 Sobic001G472600--Sobic004G146800 Sobic003G084700 Sobic003G084700 Sobic001G472600--Sobic003G084700 Sobic003G119800 Sobic003G119800 Sobic001G472600--Sobic003G119800 Sobic005G026100--Sobic004G146800 Sobic005G026100--Sobic006G209400 Sobic009G231200 Sobic009G231200 Sobic005G026100--Sobic009G231200 Sobic010G267500 Sobic010G267500 Sobic005G026100--Sobic010G267500 Sobic001G541100 Sobic001G541100 Sobic005G026100--Sobic001G541100 Sobic001G391600 Sobic001G391600 Sobic005G026100--Sobic001G391600 Sobic009G200800 Sobic009G200800 Sobic005G026100--Sobic009G200800 Sobic001G333600 Sobic001G333600 Sobic005G026100--Sobic001G333600 Sobic008G188700 Sobic008G188700 Sobic005G026100--Sobic008G188700 Sobic001G220300 Sobic001G220300 Sobic010G249100--Sobic001G220300 Sobic010G249100--Sobic008G124900 Sobic001G392300 Sobic001G392300 Sobic010G249100--Sobic001G392300 Sobic006G204800 Sobic006G204800 Sobic010G249100--Sobic006G204800 Sobic010G118950 Sobic010G118950 Sobic010G249100--Sobic010G118950 Sobic010G053800 Sobic010G053800 Sobic010G249100--Sobic010G053800 Sobic001G205200 Sobic001G205200 Sobic010G249100--Sobic001G205200 Sobic004G353000 Sobic004G353000 Sobic010G249100--Sobic004G353000 Sobic010G275500 Sobic010G275500 Sobic010G249100--Sobic010G275500 Sobic009G165800--Sobic001G080700 Sobic001G047400 Sobic001G047400 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic010G083700 Sobic010G083700 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200 Sobic007G019800--Sobic004G121100 Sobic007G019800--Sobic001G472600 Sobic004G059000 Sobic004G059000 Sobic007G019800--Sobic004G059000 Sobic009G193400 Sobic009G193400 Sobic007G019800--Sobic009G193400 Sobic002G113900 Sobic002G113900 Sobic007G019800--Sobic002G113900 Sobic004G117900 Sobic004G117900 Sobic007G019800--Sobic004G117900 Sobic002G350300 Sobic002G350300 Sobic007G019800--Sobic002G350300 Sobic004G301900 Sobic004G301900 Sobic007G019800--Sobic004G301900 Sobic007G019800--Sobic009G165800 Sobic006G092400 Sobic006G092400 Sobic006G209400--Sobic006G092400 Sobic003G295900 Sobic003G295900 Sobic006G209400--Sobic003G295900 Sobic002G290400 Sobic002G290400 Sobic006G209400--Sobic002G290400 Sobic006G209400--Sobic001G541100 Sobic001G031600 Sobic001G031600 Sobic006G209400--Sobic001G031600 Sobic006G209400--Sobic009G165800 Sobic001G395400 Sobic001G395400 Sobic006G209400--Sobic001G395400 Sobic003G076500 Sobic003G076500 Sobic006G209400--Sobic003G076500 Sobic010G116400 Sobic010G116400 Sobic006G209400--Sobic010G116400
Octagon: transcription factors


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