Gene annotation
Transcriptome id Sobic.005G026100.1
Synonym Sb05g002170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
hydroxymethylglutaryl-CoA lyase, putative, expressed
UniProt C5Y433
Pfam PF00682
Panther DB PTHR10277 PTHR10277:SF40
NCBI CDD -
KEGG Orthology K01640; E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G26800 : Aldolase superfamily protein
RAP-DB (Rice) LOC_Os11g04210.1 : hydroxymethylglutaryl-CoA lyase, putative, expressed
MaizeGDB (Corn) Zm00025a033407
Brachypodium KQJ92415
Barley -
Wheat TraesCS5A02G137700 , TraesCS5D02G154300 , TraesCS5B02G136400
Populus -


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cDNA sequences
Sobic.005G026100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
2 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
3 Sobic.009G231200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein of unknown function DUF1421 domain containing protein, expressed -
4 Sobic.010G267500 bZIP orthologous(PubMedID : 28671251)@E2F-related protein, putative, expressed -
5 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
6 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -
7 Sobic.009G200800 protein kinase domain containing protein, expressed -
8 Sobic.001G333600 membrane-anchored ubiquitin-fold protein, putative, expressed -
9 Sobic.008G188700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
10 Sobic.007G019800 expressed protein -
11 Sobic.001G031600 calmodulin binding protein, putative, expressed -
12 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
13 Sobic.009G229200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.004G203400 repressor of RNA polymerase III transcription MAF1, putative, expressed -
15 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
16 Sobic.006G130800 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
17 Sobic.001G048100 OsAPRL5 adenosine 5\'-phosphosulfate reductase-like OsAPRL5, expressed -
18 Sobic.004G247000 -(PubMedID : 26976818)@"Gln-4(Ortholog in maize:Martin et al., 2006)"(PubMedID : 31659887)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
19 Sobic.010G156000 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.003G290100 dual specificity protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic005G026100 Sobic005G026100 Sobic004G146800 Sobic004G146800 Sobic005G026100--Sobic004G146800 Sobic006G209400 Sobic006G209400 Sobic005G026100--Sobic006G209400 Sobic009G231200 Sobic009G231200 Sobic005G026100--Sobic009G231200 Sobic010G267500 Sobic010G267500 Sobic005G026100--Sobic010G267500 Sobic001G541100 Sobic001G541100 Sobic005G026100--Sobic001G541100 Sobic001G391600 Sobic001G391600 Sobic005G026100--Sobic001G391600 Sobic009G200800 Sobic009G200800 Sobic005G026100--Sobic009G200800 Sobic001G333600 Sobic001G333600 Sobic005G026100--Sobic001G333600 Sobic008G188700 Sobic008G188700 Sobic005G026100--Sobic008G188700 Sobic001G421900 Sobic001G421900 Sobic004G146800--Sobic001G421900 Sobic001G425800 Sobic001G425800 Sobic004G146800--Sobic001G425800 Sobic001G358000 Sobic001G358000 Sobic004G146800--Sobic001G358000 Sobic001G472600 Sobic001G472600 Sobic004G146800--Sobic001G472600 Sobic004G146800--Sobic005G026100 Sobic010G249100 Sobic010G249100 Sobic004G146800--Sobic010G249100 Sobic009G165800 Sobic009G165800 Sobic004G146800--Sobic009G165800 Sobic007G019800 Sobic007G019800 Sobic004G146800--Sobic007G019800 Sobic004G146800--Sobic006G209400 Sobic006G092400 Sobic006G092400 Sobic006G209400--Sobic006G092400 Sobic003G295900 Sobic003G295900 Sobic006G209400--Sobic003G295900 Sobic002G290400 Sobic002G290400 Sobic006G209400--Sobic002G290400 Sobic006G209400--Sobic001G541100 Sobic001G031600 Sobic001G031600 Sobic006G209400--Sobic001G031600 Sobic006G209400--Sobic009G165800 Sobic001G395400 Sobic001G395400 Sobic006G209400--Sobic001G395400 Sobic003G076500 Sobic003G076500 Sobic006G209400--Sobic003G076500 Sobic010G116400 Sobic010G116400 Sobic006G209400--Sobic010G116400 Sobic004G031600 Sobic004G031600 Sobic009G231200--Sobic004G031600 Sobic002G293300 Sobic002G293300 Sobic009G231200--Sobic002G293300 Sobic010G052800 Sobic010G052800 Sobic009G231200--Sobic010G052800 Sobic009G180500 Sobic009G180500 Sobic009G231200--Sobic009G180500 Sobic001G082900 Sobic001G082900 Sobic009G231200--Sobic001G082900 Sobic009G231200--Sobic009G200800 Sobic009G231200--Sobic001G333600 Sobic009G231200--Sobic005G026100 Sobic009G231200--Sobic001G031600 Sobic006G207500 Sobic006G207500 Sobic010G267500--Sobic006G207500 Sobic004G060600 Sobic004G060600 Sobic010G267500--Sobic004G060600 Sobic007G097900 Sobic007G097900 Sobic010G267500--Sobic007G097900 Sobic003G369500 Sobic003G369500 Sobic010G267500--Sobic003G369500 Sobic003G402600 Sobic003G402600 Sobic010G267500--Sobic003G402600 Sobic007G226100 Sobic007G226100 Sobic010G267500--Sobic007G226100 Sobic003G361500 Sobic003G361500 Sobic010G267500--Sobic003G361500 Sobic004G001400 Sobic004G001400 Sobic010G267500--Sobic004G001400 Sobic008G137600 Sobic008G137600 Sobic010G267500--Sobic008G137600 Sobic009G219000 Sobic009G219000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic009G219900 Sobic009G219900 Sobic001G541100--Sobic009G219900 Sobic009G138100 Sobic009G138100 Sobic001G541100--Sobic009G138100 Sobic001G541100--Sobic006G209400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic001G391600--Sobic009G165800 Sobic010G083700 Sobic010G083700 Sobic001G391600--Sobic010G083700 Sobic001G391600--Sobic001G105500 Sobic009G193400 Sobic009G193400 Sobic001G391600--Sobic009G193400 Sobic001G391600--Sobic007G019800 Sobic003G226500 Sobic003G226500 Sobic001G391600--Sobic003G226500 Sobic004G079100 Sobic004G079100 Sobic001G391600--Sobic004G079100 Sobic002G129000 Sobic002G129000 Sobic001G391600--Sobic002G129000 Sobic004G104900 Sobic004G104900 Sobic001G391600--Sobic004G104900 Sobic008G152600 Sobic008G152600 Sobic009G200800--Sobic008G152600 Sobic010G251300 Sobic010G251300 Sobic009G200800--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic009G200800--Sobic003G309200 Sobic008G124900 Sobic008G124900 Sobic009G200800--Sobic008G124900 Sobic009G200800--Sobic009G231200 Sobic009G200800--Sobic001G333600 Sobic009G200800--Sobic009G180500 Sobic008G047400 Sobic008G047400 Sobic009G200800--Sobic008G047400 Sobic009G200800--Sobic010G249100 Sobic002G358800 Sobic002G358800 Sobic001G333600--Sobic002G358800 Sobic003G350800 Sobic003G350800 Sobic001G333600--Sobic003G350800 Sobic001G333600--Sobic008G047400 Sobic001G333600--Sobic010G251300 Sobic001G333600--Sobic009G200800 Sobic001G333600--Sobic009G231200 Sobic009G066900 Sobic009G066900 Sobic001G333600--Sobic009G066900 Sobic002G217700 Sobic002G217700 Sobic001G333600--Sobic002G217700 Sobic001G333600--Sobic003G309200 Sobic007G026100 Sobic007G026100 Sobic008G188700--Sobic007G026100 Sobic001G420700 Sobic001G420700 Sobic008G188700--Sobic001G420700 Sobic009G195900 Sobic009G195900 Sobic008G188700--Sobic009G195900 Sobic010G105600 Sobic010G105600 Sobic008G188700--Sobic010G105600 Sobic004G086100 Sobic004G086100 Sobic008G188700--Sobic004G086100 Sobic003G405700 Sobic003G405700 Sobic008G188700--Sobic003G405700 Sobic001G105100 Sobic001G105100 Sobic008G188700--Sobic001G105100 Sobic003G052400 Sobic003G052400 Sobic008G188700--Sobic003G052400 Sobic009G050700 Sobic009G050700 Sobic008G188700--Sobic009G050700
Octagon: transcription factors


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