Gene annotation
Transcriptome id Sobic.009G229200.2,Sobic.009G229200.1
Synonym auxin/indole-3-acetic acid (Aux/IAA), Sb09g028210, IAA8, SbIAA23
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A1Z5R4N8 , A0A1B6PA86
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF9
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G22670 : indoleacetic acid-induced protein 8
RAP-DB (Rice) LOC_Os05g48590.1 : OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a036578 , Zm00025a044534
Brachypodium KQK04925 , KQK09168
Barley HORVU3Hr1G062160.8 , HORVU3Hr1G062160.9 , HORVU3Hr1G062160.2 , HORVU3Hr1G062160.3 , HORVU3Hr1G062160.6 , HORVU3Hr1G062160.7 , HORVU3Hr1G062160.5 , HORVU1Hr1G086070.1 , HORVU1Hr1G086070.2 , HORVU1Hr1G086070.3 , HORVU1Hr1G086070.4 , HORVU1Hr1G086070.5 , HORVU1Hr1G086070.6 , HORVU1Hr1G086070.7 , HORVU1Hr1G086070.8 , HORVU3Hr1G062160.10 , HORVU3Hr1G088810.2 , HORVU3Hr1G088810.3 , HORVU3Hr1G088810.1 , HORVU3Hr1G088810.6 , HORVU3Hr1G088810.4
Wheat TraesCS3A02G270000 , TraesCS1A02G390200 , TraesCS1D02G398400 , TraesCS3D02G269700 , TraesCS1B02G418400 , TraesCS3B02G303900
Populus -


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cDNA sequences
Sobic.009G229200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G134001 - K14490: histidine-containing phosphotransfer peotein
2 Sobic.004G203400 repressor of RNA polymerase III transcription MAF1, putative, expressed -
3 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
4 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
5 Sobic.001G391600 plant neutral invertase domain containing protein, expressed -
6 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
8 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
9 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
10 Sobic.003G048500 acyl-protein thioesterase, putative, expressed K06130: lysophospholipase II
11 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
12 Sobic.010G277800 lysM domain containing protein, putative, expressed -
13 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
14 Sobic.006G254100 GTP cyclohydrolase I 1, putative, expressed K01495: GCH1, GTP cyclohydrolase IA
15 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
16 Sobic.003G316700 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
17 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.010G184100 mitochondrial carrier protein, putative, expressed -
19 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
20 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1


Gene co-expression network
sample Sobic009G229200 Sobic009G229200 Sobic002G134001 Sobic002G134001 Sobic009G229200--Sobic002G134001 Sobic004G203400 Sobic004G203400 Sobic009G229200--Sobic004G203400 Sobic003G264200 Sobic003G264200 Sobic009G229200--Sobic003G264200 Sobic009G165800 Sobic009G165800 Sobic009G229200--Sobic009G165800 Sobic001G391600 Sobic001G391600 Sobic009G229200--Sobic001G391600 Sobic009G005900 Sobic009G005900 Sobic009G229200--Sobic009G005900 Sobic004G130100 Sobic004G130100 Sobic009G229200--Sobic004G130100 Sobic003G010400 Sobic003G010400 Sobic009G229200--Sobic003G010400 Sobic009G174900 Sobic009G174900 Sobic009G229200--Sobic009G174900 Sobic002G134001--Sobic009G229200 Sobic002G134001--Sobic009G174900 Sobic003G337000 Sobic003G337000 Sobic002G134001--Sobic003G337000 Sobic006G212100 Sobic006G212100 Sobic002G134001--Sobic006G212100 Sobic004G079100 Sobic004G079100 Sobic002G134001--Sobic004G079100 Sobic002G134001--Sobic009G005900 Sobic001G433400 Sobic001G433400 Sobic002G134001--Sobic001G433400 Sobic001G007200 Sobic001G007200 Sobic002G134001--Sobic001G007200 Sobic002G400000 Sobic002G400000 Sobic002G134001--Sobic002G400000 Sobic004G203400--Sobic009G229200 Sobic010G042100 Sobic010G042100 Sobic004G203400--Sobic010G042100 Sobic001G388200 Sobic001G388200 Sobic004G203400--Sobic001G388200 Sobic004G203400--Sobic002G134001 Sobic004G203400--Sobic009G165800 Sobic003G117900 Sobic003G117900 Sobic004G203400--Sobic003G117900 Sobic001G314500 Sobic001G314500 Sobic004G203400--Sobic001G314500 Sobic010G083700 Sobic010G083700 Sobic004G203400--Sobic010G083700 Sobic006G232200 Sobic006G232200 Sobic004G203400--Sobic006G232200 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic001G080700 Sobic001G080700 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic009G222500 Sobic009G222500 Sobic003G264200--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic003G264200--Sobic006G049700 Sobic006G101700 Sobic006G101700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic009G165800--Sobic001G080700 Sobic001G047400 Sobic001G047400 Sobic009G165800--Sobic001G047400 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic009G165800--Sobic003G264200 Sobic001G391600--Sobic009G165800 Sobic001G391600--Sobic010G083700 Sobic001G105500 Sobic001G105500 Sobic001G391600--Sobic001G105500 Sobic009G193400 Sobic009G193400 Sobic001G391600--Sobic009G193400 Sobic007G019800 Sobic007G019800 Sobic001G391600--Sobic007G019800 Sobic003G226500 Sobic003G226500 Sobic001G391600--Sobic003G226500 Sobic001G391600--Sobic004G079100 Sobic002G129000 Sobic002G129000 Sobic001G391600--Sobic002G129000 Sobic004G104900 Sobic004G104900 Sobic001G391600--Sobic004G104900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic004G321900 Sobic004G321900 Sobic009G005900--Sobic004G321900 Sobic009G005900--Sobic001G433400 Sobic009G005900--Sobic002G400000 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic009G005900--Sobic003G010400 Sobic009G005900--Sobic006G212100 Sobic009G217900 Sobic009G217900 Sobic004G130100--Sobic009G217900 Sobic004G130100--Sobic006G232200 Sobic001G501200 Sobic001G501200 Sobic004G130100--Sobic001G501200 Sobic004G130100--Sobic003G337000 Sobic002G363100 Sobic002G363100 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic002G161800 Sobic002G161800 Sobic003G010400--Sobic002G161800 Sobic008G046500 Sobic008G046500 Sobic003G010400--Sobic008G046500 Sobic003G010400--Sobic003G264200 Sobic003G010400--Sobic010G251000 Sobic003G010400--Sobic007G019800 Sobic003G010400--Sobic009G005900 Sobic010G068500 Sobic010G068500 Sobic003G010400--Sobic010G068500 Sobic003G010400--Sobic001G080700 Sobic001G007000 Sobic001G007000 Sobic003G010400--Sobic001G007000 Sobic009G174900--Sobic003G337000 Sobic009G174900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic009G174900--Sobic004G327300 Sobic009G174900--Sobic009G135600 Sobic007G168600 Sobic007G168600 Sobic009G174900--Sobic007G168600 Sobic009G174900--Sobic006G212100 Sobic001G491100 Sobic001G491100 Sobic009G174900--Sobic001G491100 Sobic009G174900--Sobic002G134001 Sobic001G054200 Sobic001G054200 Sobic009G174900--Sobic001G054200
Octagon: transcription factors


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