Gene annotation
Transcriptome id Sobic.003G010400.1
Synonym Sb03g001085, RABG3d, AtRABG3d
Functional annotation ras-related protein, putative, expressed
UniProt C5XK96
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF502
NCBI CDD KOG0394; Ras-related GTPase
KEGG Orthology K07897; Ras-related protein Rab-7A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G52280 : RAB GTPase homolog G3D
RAP-DB (Rice) LOC_Os01g12730.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a044373 , Zm00025a035969 , Zm00025a037936
Brachypodium PNT70198 , KQK03392 , KQK05380 , KQK05378 , KQK05379
Barley HORVU3Hr1G071820.1 , HORVU1Hr1G076530.6 , HORVU1Hr1G076530.4 , HORVU1Hr1G076530.5 , HORVU1Hr1G076530.2 , HORVU1Hr1G076530.3 , HORVU1Hr1G076530.1 , HORVU3Hr1G030910.4 , HORVU3Hr1G030910.5 , HORVU3Hr1G030910.1 , HORVU3Hr1G030910.2 , HORVU3Hr1G030910.3
Wheat TraesCS3D02G290000 , TraesCS3B02G179400 , TraesCS1D02G339700 , TraesCS1D02G339700 , TraesCS1B02G374600 , TraesCS1D02G362800 , TraesCS1A02G337800 , TraesCS1A02G358000 , TraesCS3B02G324900 , TraesCS3B02G324900 , TraesCS1B02G350200 , TraesCS3A02G152300 , TraesCS3A02G290200 , TraesCS3D02G160100 , TraesCS3D02G160100 , TraesCS3D02G160100
Populus -


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cDNA sequences
Sobic.003G010400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G161800 Myb-like DNA-binding domain containing protein, putative, expressed -
2 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
3 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
4 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
5 Sobic.007G019800 expressed protein -
6 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
7 Sobic.010G068500 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
9 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
10 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
11 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
12 Sobic.001G048100 OsAPRL5 adenosine 5\'-phosphosulfate reductase-like OsAPRL5, expressed -
13 Sobic.004G121100 expressed protein -
14 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
15 Sobic.002G113900 lipid binding protein, putative, expressed -
16 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
17 Sobic.001G365800 glutathione peroxidase domain containing protein, expressed K00432: gpx, btuE, glutathione peroxidase
18 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1
19 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
20 Sobic.007G187200 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic003G010400 Sobic003G010400 Sobic002G161800 Sobic002G161800 Sobic003G010400--Sobic002G161800 Sobic008G046500 Sobic008G046500 Sobic003G010400--Sobic008G046500 Sobic003G264200 Sobic003G264200 Sobic003G010400--Sobic003G264200 Sobic010G251000 Sobic010G251000 Sobic003G010400--Sobic010G251000 Sobic007G019800 Sobic007G019800 Sobic003G010400--Sobic007G019800 Sobic009G005900 Sobic009G005900 Sobic003G010400--Sobic009G005900 Sobic010G068500 Sobic010G068500 Sobic003G010400--Sobic010G068500 Sobic001G080700 Sobic001G080700 Sobic003G010400--Sobic001G080700 Sobic001G007000 Sobic001G007000 Sobic003G010400--Sobic001G007000 Sobic001G392300 Sobic001G392300 Sobic002G161800--Sobic001G392300 Sobic002G161800--Sobic001G080700 Sobic008G179700 Sobic008G179700 Sobic002G161800--Sobic008G179700 Sobic002G161800--Sobic010G251000 Sobic001G281600 Sobic001G281600 Sobic002G161800--Sobic001G281600 Sobic006G008600 Sobic006G008600 Sobic002G161800--Sobic006G008600 Sobic002G054300 Sobic002G054300 Sobic002G161800--Sobic002G054300 Sobic008G047800 Sobic008G047800 Sobic002G161800--Sobic008G047800 Sobic001G332500 Sobic001G332500 Sobic002G161800--Sobic001G332500 Sobic008G046500--Sobic001G007000 Sobic006G200600 Sobic006G200600 Sobic008G046500--Sobic006G200600 Sobic001G389100 Sobic001G389100 Sobic008G046500--Sobic001G389100 Sobic007G093800 Sobic007G093800 Sobic008G046500--Sobic007G093800 Sobic008G046500--Sobic010G251000 Sobic004G092500 Sobic004G092500 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic009G068500 Sobic009G068500 Sobic008G046500--Sobic009G068500 Sobic003G102400 Sobic003G102400 Sobic008G046500--Sobic003G102400 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic003G264200--Sobic001G080700 Sobic007G166400 Sobic007G166400 Sobic003G264200--Sobic007G166400 Sobic009G222500 Sobic009G222500 Sobic003G264200--Sobic009G222500 Sobic006G049700 Sobic006G049700 Sobic003G264200--Sobic006G049700 Sobic006G101700 Sobic006G101700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic009G165800 Sobic009G165800 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic010G251000--Sobic001G007000 Sobic010G251000--Sobic001G080700 Sobic010G251000--Sobic006G200600 Sobic004G066200 Sobic004G066200 Sobic010G251000--Sobic004G066200 Sobic004G121100 Sobic004G121100 Sobic010G251000--Sobic004G121100 Sobic010G251000--Sobic001G392300 Sobic001G047400 Sobic001G047400 Sobic010G251000--Sobic001G047400 Sobic004G353200 Sobic004G353200 Sobic010G251000--Sobic004G353200 Sobic010G251000--Sobic008G046500 Sobic007G019800--Sobic004G121100 Sobic001G472600 Sobic001G472600 Sobic007G019800--Sobic001G472600 Sobic004G059000 Sobic004G059000 Sobic007G019800--Sobic004G059000 Sobic009G193400 Sobic009G193400 Sobic007G019800--Sobic009G193400 Sobic002G113900 Sobic002G113900 Sobic007G019800--Sobic002G113900 Sobic004G117900 Sobic004G117900 Sobic007G019800--Sobic004G117900 Sobic002G350300 Sobic002G350300 Sobic007G019800--Sobic002G350300 Sobic004G301900 Sobic004G301900 Sobic007G019800--Sobic004G301900 Sobic007G019800--Sobic009G165800 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic004G321900 Sobic004G321900 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic009G219000 Sobic009G219000 Sobic010G068500--Sobic009G219000 Sobic006G119800 Sobic006G119800 Sobic010G068500--Sobic006G119800 Sobic002G134600 Sobic002G134600 Sobic010G068500--Sobic002G134600 Sobic003G309200 Sobic003G309200 Sobic010G068500--Sobic003G309200 Sobic010G068500--Sobic003G010400 Sobic006G225600 Sobic006G225600 Sobic010G068500--Sobic006G225600 Sobic001G162100 Sobic001G162100 Sobic010G068500--Sobic001G162100 Sobic001G425800 Sobic001G425800 Sobic010G068500--Sobic001G425800 Sobic001G516100 Sobic001G516100 Sobic010G068500--Sobic001G516100 Sobic001G080700--Sobic001G392300 Sobic001G080700--Sobic009G165800 Sobic001G080700--Sobic010G251000 Sobic001G080700--Sobic004G066200 Sobic001G080700--Sobic003G264200 Sobic001G080700--Sobic009G222500 Sobic001G080700--Sobic006G101700 Sobic001G080700--Sobic001G332500 Sobic001G080700--Sobic001G007000 Sobic001G007000--Sobic009G068500 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic001G007000--Sobic008G046500 Sobic001G007000--Sobic001G080700 Sobic001G007000--Sobic001G031100
Octagon: transcription factors


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