Gene annotation
Transcriptome id Sobic.002G113900.1,Sobic.002G113900.2
Synonym NTMC2T4, Sb02g009740, NTMC2TYPE4
Functional annotation lipid binding protein, putative, expressed
UniProt A0A1W0W3C9 , C5X4B4
Pfam PF17047 PF00168
Panther DB PTHR10774 PTHR10774:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006950response to stress GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G61050 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os07g22640.1 : lipid binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a045718
Brachypodium KQK20147
Barley HORVU2Hr1G052430.10 , HORVU2Hr1G052430.6 , HORVU2Hr1G052430.7 , HORVU2Hr1G052430.4 , HORVU2Hr1G052430.5 , HORVU2Hr1G052430.2 , HORVU2Hr1G052430.3 , HORVU2Hr1G052430.1 , HORVU2Hr1G052430.8 , HORVU2Hr1G052430.9
Wheat TraesCS2A02G244800 , TraesCS2B02G262400 , TraesCS2D02G242600
Populus -


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cDNA sequences
Sobic.002G113900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
2 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
3 Sobic.004G226800 expressed protein -
4 Sobic.006G049700 SAM domain family protein, expressed -
5 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
6 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
7 Sobic.007G019800 expressed protein -
8 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
9 Sobic.002G268400 expressed protein -
10 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
11 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
12 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
13 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
14 Sobic.007G166100 no apical meristem protein, putative, expressed -
15 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
16 Sobic.004G232800 expressed protein -
17 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
18 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
19 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
20 Sobic.007G187200 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic002G113900 Sobic002G113900 Sobic006G270900 Sobic006G270900 Sobic002G113900--Sobic006G270900 Sobic009G004600 Sobic009G004600 Sobic002G113900--Sobic009G004600 Sobic004G226800 Sobic004G226800 Sobic002G113900--Sobic004G226800 Sobic006G049700 Sobic006G049700 Sobic002G113900--Sobic006G049700 Sobic004G356900 Sobic004G356900 Sobic002G113900--Sobic004G356900 Sobic004G301900 Sobic004G301900 Sobic002G113900--Sobic004G301900 Sobic007G019800 Sobic007G019800 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G268400 Sobic002G268400 Sobic002G113900--Sobic002G268400 Sobic006G270900--Sobic002G268400 Sobic006G270900--Sobic002G113900 Sobic001G281600 Sobic001G281600 Sobic006G270900--Sobic001G281600 Sobic006G270900--Sobic004G356900 Sobic010G279700 Sobic010G279700 Sobic006G270900--Sobic010G279700 Sobic003G405700 Sobic003G405700 Sobic006G270900--Sobic003G405700 Sobic010G057900 Sobic010G057900 Sobic006G270900--Sobic010G057900 Sobic006G270900--Sobic009G004600 Sobic001G143500 Sobic001G143500 Sobic006G270900--Sobic001G143500 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600 Sobic004G226800--Sobic004G356900 Sobic004G226800--Sobic006G049700 Sobic002G256300 Sobic002G256300 Sobic004G226800--Sobic002G256300 Sobic004G226800--Sobic002G113900 Sobic010G193800 Sobic010G193800 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G232800 Sobic004G232800 Sobic004G226800--Sobic004G232800 Sobic009G222500 Sobic009G222500 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic003G264200 Sobic003G264200 Sobic006G049700--Sobic003G264200 Sobic006G101700 Sobic006G101700 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic006G049700--Sobic002G113900 Sobic006G049700--Sobic004G356900 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G356900--Sobic004G226800 Sobic004G356900--Sobic009G004600 Sobic004G356900--Sobic010G193800 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G356900--Sobic004G232800 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic010G090900 Sobic010G090900 Sobic004G301900--Sobic010G090900 Sobic003G250500 Sobic003G250500 Sobic004G301900--Sobic003G250500 Sobic004G301900--Sobic002G113900 Sobic004G059000 Sobic004G059000 Sobic004G301900--Sobic004G059000 Sobic004G253000 Sobic004G253000 Sobic004G301900--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic004G301900--Sobic001G512600 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G301900--Sobic004G356900 Sobic004G121100 Sobic004G121100 Sobic007G019800--Sobic004G121100 Sobic001G472600 Sobic001G472600 Sobic007G019800--Sobic001G472600 Sobic007G019800--Sobic004G059000 Sobic009G193400 Sobic009G193400 Sobic007G019800--Sobic009G193400 Sobic007G019800--Sobic002G113900 Sobic004G117900 Sobic004G117900 Sobic007G019800--Sobic004G117900 Sobic002G350300 Sobic002G350300 Sobic007G019800--Sobic002G350300 Sobic007G019800--Sobic004G301900 Sobic009G165800 Sobic009G165800 Sobic007G019800--Sobic009G165800 Sobic004G104900--Sobic002G256300 Sobic010G083700 Sobic010G083700 Sobic004G104900--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic003G007500 Sobic003G007500 Sobic004G104900--Sobic003G007500 Sobic004G066200 Sobic004G066200 Sobic004G104900--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic004G104900--Sobic009G228700 Sobic001G007200 Sobic001G007200 Sobic004G104900--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic004G104900--Sobic009G246950 Sobic002G268400--Sobic010G057900 Sobic001G152000 Sobic001G152000 Sobic002G268400--Sobic001G152000 Sobic004G074300 Sobic004G074300 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic009G033900 Sobic009G033900 Sobic002G268400--Sobic009G033900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800
Octagon: transcription factors


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