Gene annotation
Transcriptome id Sobic.007G187200.2
Synonym Sb07g025710
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5RAL4
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G47700 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g42640.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005329 , Zm00025a033604
Brachypodium -
Barley -
Wheat TraesCS7D02G266300 , TraesCS7A02G268500 , TraesCS7A02G268500 , TraesCS7B02G163800 , TraesCS7B02G163800
Populus -


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cDNA sequences
Sobic.007G187200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
2 Sobic.006G200600 expressed protein -
3 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
4 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
5 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
6 Sobic.009G198100 expressed protein -
7 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
8 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
9 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
10 Sobic.006G278700 expressed protein -
11 Sobic.008G004400 GIL1, putative, expressed -
12 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
13 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
14 Sobic.003G029100 frigida, putative, expressed -
15 Sobic.002G113900 lipid binding protein, putative, expressed -
16 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
17 Sobic.009G228700 expressed protein -
18 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
19 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
20 Sobic.001G495000 cyclin-T1-4, putative, expressed K15188: cyclin T


Gene co-expression network
sample Sobic007G187200 Sobic007G187200 Sobic004G356900 Sobic004G356900 Sobic007G187200--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic007G187200--Sobic006G200600 Sobic008G046500 Sobic008G046500 Sobic007G187200--Sobic008G046500 Sobic001G143500 Sobic001G143500 Sobic007G187200--Sobic001G143500 Sobic004G066200 Sobic004G066200 Sobic007G187200--Sobic004G066200 Sobic009G198100 Sobic009G198100 Sobic007G187200--Sobic009G198100 Sobic007G203200 Sobic007G203200 Sobic007G187200--Sobic007G203200 Sobic004G104900 Sobic004G104900 Sobic007G187200--Sobic004G104900 Sobic007G118200 Sobic007G118200 Sobic007G187200--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic004G353200 Sobic004G353200 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic008G047800 Sobic008G047800 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic001G007000 Sobic001G007000 Sobic008G046500--Sobic001G007000 Sobic008G046500--Sobic006G200600 Sobic001G389100 Sobic001G389100 Sobic008G046500--Sobic001G389100 Sobic007G093800 Sobic007G093800 Sobic008G046500--Sobic007G093800 Sobic008G046500--Sobic010G251000 Sobic004G092500 Sobic004G092500 Sobic008G046500--Sobic004G092500 Sobic004G286500 Sobic004G286500 Sobic008G046500--Sobic004G286500 Sobic009G068500 Sobic009G068500 Sobic008G046500--Sobic009G068500 Sobic003G102400 Sobic003G102400 Sobic008G046500--Sobic003G102400 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic003G401100 Sobic003G401100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300 Sobic001G356600 Sobic001G356600 Sobic004G066200--Sobic001G356600 Sobic009G228700 Sobic009G228700 Sobic004G066200--Sobic009G228700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic004G066200--Sobic003G248200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic010G033400 Sobic010G033400 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic003G081000 Sobic003G081000 Sobic009G198100--Sobic003G081000 Sobic008G174300 Sobic008G174300 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic010G145800 Sobic010G145800 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic007G203200--Sobic001G281600 Sobic010G140400 Sobic010G140400 Sobic007G203200--Sobic010G140400 Sobic010G279700 Sobic010G279700 Sobic007G203200--Sobic010G279700 Sobic005G106500 Sobic005G106500 Sobic007G203200--Sobic005G106500 Sobic007G203200--Sobic003G401100 Sobic006G118700 Sobic006G118700 Sobic007G203200--Sobic006G118700 Sobic002G256300 Sobic002G256300 Sobic004G104900--Sobic002G256300 Sobic010G083700 Sobic010G083700 Sobic004G104900--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic003G007500 Sobic003G007500 Sobic004G104900--Sobic003G007500 Sobic004G104900--Sobic004G066200 Sobic004G104900--Sobic009G228700 Sobic001G007200 Sobic001G007200 Sobic004G104900--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic004G104900--Sobic009G246950 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700
Octagon: transcription factors


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