Gene annotation
Transcriptome id Sobic.001G495000.3,Sobic.001G495000.2
Synonym Sb01g046250
Functional annotation cyclin-T1-4, putative, expressed
UniProt A0A1Z5SBD9 , A0A1Z5SB83
Pfam PF00134
Panther DB PTHR10026 PTHR10026:SF74
NCBI CDD KOG0834; CDK9 kinase-activating protein cyclin T
KEGG Orthology K15188; cyclin T
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G45190 : Cyclin family protein
RAP-DB (Rice) LOC_Os12g30020.2 : cyclin-T1-4, putative, expressed
MaizeGDB (Corn) Zm00025a000790 , Zm00025a046579
Brachypodium -
Barley HORVU5Hr1G038970.14 , HORVU5Hr1G038970.18 , HORVU5Hr1G038970.19 , HORVU5Hr1G038970.12 , HORVU5Hr1G038970.16 , HORVU5Hr1G038970.17 , HORVU5Hr1G038970.15 , HORVU5Hr1G038970.13 , HORVU5Hr1G038970.10 , HORVU5Hr1G038970.11 , HORVU5Hr1G038970.2 , HORVU5Hr1G038970.3 , HORVU5Hr1G038970.4 , HORVU5Hr1G038970.5 , HORVU5Hr1G038970.8 , HORVU5Hr1G038970.9 , HORVU5Hr1G038970.1 , HORVU5Hr1G038970.6 , HORVU5Hr1G038970.7
Wheat TraesCS5B02G112100 , TraesCS5B02G112100 , TraesCS5D02G121900 , TraesCS5A02G103900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G495000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G198100 expressed protein -
2 Sobic.007G187200 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.007G053500 mps one binder kinase activator-like 1A, putative, expressed K06685: MOB1, MOB kinase activator 1
4 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
5 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.001G056200 expressed protein -
7 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
8 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
9 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
10 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
11 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
12 Sobic.003G437500 syntaxin 6, putative, expressed -
13 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
14 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
15 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
16 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
17 Sobic.010G058900 BSD domain containing protein, expressed -
18 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
19 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
20 Sobic.006G278700 expressed protein -


Gene co-expression network
sample Sobic001G495000 Sobic001G495000 Sobic009G198100 Sobic009G198100 Sobic001G495000--Sobic009G198100 Sobic007G187200 Sobic007G187200 Sobic001G495000--Sobic007G187200 Sobic007G053500 Sobic007G053500 Sobic001G495000--Sobic007G053500 Sobic002G378200 Sobic002G378200 Sobic001G495000--Sobic002G378200 Sobic010G193800 Sobic010G193800 Sobic001G495000--Sobic010G193800 Sobic001G056200 Sobic001G056200 Sobic001G495000--Sobic001G056200 Sobic002G010300 Sobic002G010300 Sobic001G495000--Sobic002G010300 Sobic002G084300 Sobic002G084300 Sobic001G495000--Sobic002G084300 Sobic002G087900 Sobic002G087900 Sobic001G495000--Sobic002G087900 Sobic007G118200 Sobic007G118200 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic010G033400 Sobic010G033400 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic003G081000 Sobic003G081000 Sobic009G198100--Sobic003G081000 Sobic008G174300 Sobic008G174300 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic004G356900 Sobic004G356900 Sobic007G187200--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic007G187200--Sobic006G200600 Sobic008G046500 Sobic008G046500 Sobic007G187200--Sobic008G046500 Sobic001G143500 Sobic001G143500 Sobic007G187200--Sobic001G143500 Sobic004G066200 Sobic004G066200 Sobic007G187200--Sobic004G066200 Sobic007G187200--Sobic009G198100 Sobic007G203200 Sobic007G203200 Sobic007G187200--Sobic007G203200 Sobic004G104900 Sobic004G104900 Sobic007G187200--Sobic004G104900 Sobic007G187200--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic007G053500--Sobic008G004400 Sobic007G053500--Sobic001G143500 Sobic003G439800 Sobic003G439800 Sobic007G053500--Sobic003G439800 Sobic006G278700 Sobic006G278700 Sobic007G053500--Sobic006G278700 Sobic002G268400 Sobic002G268400 Sobic007G053500--Sobic002G268400 Sobic001G360200 Sobic001G360200 Sobic007G053500--Sobic001G360200 Sobic010G279700 Sobic010G279700 Sobic007G053500--Sobic010G279700 Sobic010G219400 Sobic010G219400 Sobic007G053500--Sobic010G219400 Sobic007G191700 Sobic007G191700 Sobic007G053500--Sobic007G191700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G378200--Sobic002G084300 Sobic004G007300 Sobic004G007300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic001G056200--Sobic002G084300 Sobic004G263900 Sobic004G263900 Sobic001G056200--Sobic004G263900 Sobic001G408700 Sobic001G408700 Sobic001G056200--Sobic001G408700 Sobic004G013600 Sobic004G013600 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic003G437500 Sobic003G437500 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic001G056200--Sobic004G007300 Sobic001G056200--Sobic008G174300 Sobic007G026300 Sobic007G026300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic002G084300--Sobic001G056200 Sobic002G084300--Sobic004G263900 Sobic002G084300--Sobic008G174300 Sobic002G084300--Sobic002G378200 Sobic002G084300--Sobic001G028400 Sobic002G084300--Sobic001G408700 Sobic001G390500 Sobic001G390500 Sobic002G084300--Sobic001G390500 Sobic002G084300--Sobic003G081000 Sobic002G084300--Sobic009G198100 Sobic002G087900--Sobic002G010300 Sobic002G395801 Sobic002G395801 Sobic002G087900--Sobic002G395801 Sobic010G083700 Sobic010G083700 Sobic002G087900--Sobic010G083700 Sobic006G254700 Sobic006G254700 Sobic002G087900--Sobic006G254700 Sobic002G087900--Sobic004G104900 Sobic002G087900--Sobic002G256300 Sobic009G259400 Sobic009G259400 Sobic002G087900--Sobic009G259400 Sobic003G226500 Sobic003G226500 Sobic002G087900--Sobic003G226500 Sobic010G018700 Sobic010G018700 Sobic002G087900--Sobic010G018700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.