Gene annotation
Transcriptome id Sobic.010G058900.2,Sobic.010G058900.1
Synonym Sb10g005080
Functional annotation BSD domain containing protein, expressed
UniProt C5Z5C4 , A0A1W0VRM9
Pfam PF03909
Panther DB PTHR31923 PTHR31923:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49800 : BSD domain-containing protein
RAP-DB (Rice) LOC_Os06g07820.1 : BSD domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038963 , Zm00025a049838
Brachypodium KQK19364 , KQK19365
Barley -
Wheat TraesCS7D02G139800 , TraesCS7B02G040300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G058900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
3 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
4 Sobic.009G198100 expressed protein -
5 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
6 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
7 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
8 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
9 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
10 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
11 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
12 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
13 Sobic.006G278700 expressed protein -
14 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
15 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
16 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
17 Sobic.010G067700 expressed protein -
18 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
19 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2


Gene co-expression network
sample Sobic010G058900 Sobic010G058900 Sobic002G256300 Sobic002G256300 Sobic010G058900--Sobic002G256300 Sobic002G084300 Sobic002G084300 Sobic010G058900--Sobic002G084300 Sobic004G104900 Sobic004G104900 Sobic010G058900--Sobic004G104900 Sobic009G198100 Sobic009G198100 Sobic010G058900--Sobic009G198100 Sobic009G054700 Sobic009G054700 Sobic010G058900--Sobic009G054700 Sobic001G028400 Sobic001G028400 Sobic010G058900--Sobic001G028400 Sobic010G168600 Sobic010G168600 Sobic010G058900--Sobic010G168600 Sobic007G118200 Sobic007G118200 Sobic010G058900--Sobic007G118200 Sobic001G083600 Sobic001G083600 Sobic010G058900--Sobic001G083600 Sobic009G246950 Sobic009G246950 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic001G056200 Sobic001G056200 Sobic002G084300--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic002G084300--Sobic004G263900 Sobic008G174300 Sobic008G174300 Sobic002G084300--Sobic008G174300 Sobic002G378200 Sobic002G378200 Sobic002G084300--Sobic002G378200 Sobic002G084300--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic002G084300--Sobic001G408700 Sobic001G390500 Sobic001G390500 Sobic002G084300--Sobic001G390500 Sobic003G081000 Sobic003G081000 Sobic002G084300--Sobic003G081000 Sobic002G084300--Sobic009G198100 Sobic004G104900--Sobic002G256300 Sobic004G104900--Sobic010G083700 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic003G007500 Sobic003G007500 Sobic004G104900--Sobic003G007500 Sobic004G066200 Sobic004G066200 Sobic004G104900--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic004G104900--Sobic009G228700 Sobic001G007200 Sobic001G007200 Sobic004G104900--Sobic001G007200 Sobic004G104900--Sobic009G246950 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic010G033400 Sobic010G033400 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic009G054700--Sobic010G168600 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic004G034400 Sobic004G034400 Sobic009G054700--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic009G054700--Sobic004G104900 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic004G350100 Sobic004G350100 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic007G118200--Sobic001G408700 Sobic001G083600--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G083600--Sobic010G071200 Sobic001G083600--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic001G083600--Sobic001G512900 Sobic010G055500 Sobic010G055500 Sobic001G083600--Sobic010G055500 Sobic001G083600--Sobic008G174300 Sobic001G083600--Sobic002G084300 Sobic001G083600--Sobic001G056200 Sobic001G083600--Sobic010G211300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.