Gene annotation
Transcriptome id Sobic.004G203100.1
Synonym Sb04g024940, VPS20.2
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5XX36
Pfam PF03357
Panther DB PTHR22761
NCBI CDD KOG2910; Uncharacterized conserved protein predicted to be involved in protein sorting
KEGG Orthology K12195; CHMP6, charged multivesicular body protein 6
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT5G09260 : vacuolar protein sorting-associated protein 20.2
RAP-DB (Rice) LOC_Os02g38300.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021299 , Zm00025a031853
Brachypodium KQK00172
Barley HORVU1Hr1G033110.9 , HORVU1Hr1G033110.8 , HORVU1Hr1G033110.7 , HORVU1Hr1G033110.6 , HORVU1Hr1G033110.5 , HORVU1Hr1G033110.4 , HORVU1Hr1G033110.3 , HORVU1Hr1G033110.2 , HORVU1Hr1G033110.1 , HORVU2Hr1G040440.1 , HORVU1Hr1G033110.15 , HORVU1Hr1G033110.14 , HORVU1Hr1G033110.13 , HORVU1Hr1G033110.12 , HORVU1Hr1G033110.11 , HORVU1Hr1G033110.10 , HORVU1Hr1G033110.19 , HORVU6Hr1G053830.1 , HORVU1Hr1G033110.22 , HORVU1Hr1G033110.23 , HORVU1Hr1G033110.20 , HORVU1Hr1G033110.21 , HORVU6Hr1G053830.3 , HORVU6Hr1G053830.2
Wheat TraesCS6A02G210600 , TraesCS6D02G193700 , TraesCS6B02G239500
Populus -


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cDNA sequences
Sobic.004G203100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
2 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
4 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
5 Sobic.008G180900 YIF1B, putative, expressed -
6 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
7 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
8 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
9 Sobic.010G058900 BSD domain containing protein, expressed -
10 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.010G253800 expressed protein -
12 Sobic.004G349800 expressed protein -
13 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
15 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
16 Sobic.009G171700 SAG20, putative, expressed -
17 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
18 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -
19 Sobic.002G296300 expressed protein -
20 Sobic.008G107500 WRKY96, expressed -


Gene co-expression network
sample Sobic004G203100 Sobic004G203100 Sobic010G168600 Sobic010G168600 Sobic004G203100--Sobic010G168600 Sobic003G007500 Sobic003G007500 Sobic004G203100--Sobic003G007500 Sobic002G352700 Sobic002G352700 Sobic004G203100--Sobic002G352700 Sobic001G478300 Sobic001G478300 Sobic004G203100--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic004G203100--Sobic008G180900 Sobic010G238700 Sobic010G238700 Sobic004G203100--Sobic010G238700 Sobic009G054700 Sobic009G054700 Sobic004G203100--Sobic009G054700 Sobic010G083700 Sobic010G083700 Sobic004G203100--Sobic010G083700 Sobic010G058900 Sobic010G058900 Sobic004G203100--Sobic010G058900 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic009G246950 Sobic009G246950 Sobic010G168600--Sobic009G246950 Sobic010G168600--Sobic002G352700 Sobic006G263900 Sobic006G263900 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic002G256300 Sobic002G256300 Sobic010G168600--Sobic002G256300 Sobic004G104900 Sobic004G104900 Sobic010G168600--Sobic004G104900 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic002G352700--Sobic010G168600 Sobic010G253800 Sobic010G253800 Sobic002G352700--Sobic010G253800 Sobic001G057800 Sobic001G057800 Sobic002G352700--Sobic001G057800 Sobic002G352700--Sobic002G256300 Sobic002G352700--Sobic003G007500 Sobic002G352700--Sobic004G203100 Sobic002G352700--Sobic010G083700 Sobic002G352700--Sobic009G246950 Sobic002G352700--Sobic008G180900 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G149700 Sobic001G149700 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic008G180900--Sobic009G246950 Sobic008G180900--Sobic010G168600 Sobic008G180900--Sobic009G171700 Sobic009G193400 Sobic009G193400 Sobic008G180900--Sobic009G193400 Sobic008G180900--Sobic002G352700 Sobic008G180900--Sobic001G478300 Sobic008G180900--Sobic002G256300 Sobic008G180900--Sobic010G083700 Sobic008G180900--Sobic004G203100 Sobic006G222400 Sobic006G222400 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic009G036900 Sobic009G036900 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic010G238700--Sobic004G203100 Sobic010G238700--Sobic003G007500 Sobic008G132800 Sobic008G132800 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic009G054700--Sobic010G168600 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic004G034400 Sobic004G034400 Sobic009G054700--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic009G054700--Sobic004G104900 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic001G054200 Sobic001G054200 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic010G058900--Sobic002G256300 Sobic002G084300 Sobic002G084300 Sobic010G058900--Sobic002G084300 Sobic010G058900--Sobic004G104900 Sobic009G198100 Sobic009G198100 Sobic010G058900--Sobic009G198100 Sobic010G058900--Sobic009G054700 Sobic001G028400 Sobic001G028400 Sobic010G058900--Sobic001G028400 Sobic010G058900--Sobic010G168600 Sobic007G118200 Sobic007G118200 Sobic010G058900--Sobic007G118200 Sobic001G083600 Sobic001G083600 Sobic010G058900--Sobic001G083600
Octagon: transcription factors


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