Gene annotation
| Transcriptome id | Sobic.001G478300.2,Sobic.001G478300.1 |
|---|---|
| Synonym | VPS37-1, Sb01g044800 |
| Functional annotation | modifier of rudimentary protein, expressed |
| UniProt | A0A1B6QQ14 , A0A1B6QQ30 |
| Pfam | PF07200 |
| Panther DB | PTHR13678 |
| NCBI CDD | KOG3270; Uncharacterized conserved protein |
| KEGG Orthology | K12185; ESCRT-I complex subunit VPS37 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G36680 : Modifier of rudimentary (Mod(r)) protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g08770.2 : modifier of rudimentary protein, expressed |
| MaizeGDB (Corn) | Zm00025a053241 , Zm00025a019919 , Zm00025a000992 |
| Brachypodium | KQK23229 , KQK23230 |
| Barley | HORVU4Hr1G077970.2 , HORVU4Hr1G077970.3 , HORVU4Hr1G056200.11 , HORVU4Hr1G056200.10 , HORVU4Hr1G077970.4 , HORVU4Hr1G077970.1 , HORVU4Hr1G056200.9 , HORVU4Hr1G056200.8 , HORVU4Hr1G056200.7 , HORVU4Hr1G056200.6 , HORVU4Hr1G056200.5 , HORVU4Hr1G056200.4 , HORVU4Hr1G056200.3 , HORVU4Hr1G056200.1 |
| Wheat | TraesCS4A02G002400 , TraesCS4A02G002400 , TraesCS4D02G301200 , TraesCS4D02G301200 , TraesCS4B02G302700 , TraesCS4B02G302700 |
| Populus | - |
JBrowse
| Sobic.001G478300 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G231400 | OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed | - |
| 2 | Sobic.010G071200 | "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed | K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2 |
| 3 | Sobic.006G209500 | transcription initiation factor IIE subunit beta, putative, expressed | K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta |
| 4 | Sobic.001G427800 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 5 | Sobic.001G149700 | vesicle transport v-SNARE protein, putative, expressed | K08496: GOSR2, golgi SNAP receptor complex member 2 |
| 6 | Sobic.010G055500 | RNA-binding motif protein, putative, expressed | K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11 |
| 7 | Sobic.004G263900 | RNA-binding motif protein, putative, expressed | K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11 |
| 8 | Sobic.003G273100 | vesicle transport v-SNARE protein, putative, expressed | K08493: vesicle transport through interaction with t-SNAREs 1 |
| 9 | Sobic.004G274700 | SNARE associated Golgi protein, putative, expressed | - |
| 10 | Sobic.006G257900 | ubiquitin-conjugating enzyme, putative, expressed | K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D |
| 11 | Sobic.001G371300 | zinc finger, C3HC4 type domain containing protein, expressed | K11982: E3 ubiquitin-protein ligase RNF115/126 |
| 12 | Sobic.001G028400 | domain of unknown function domain containing protein, expressed | - |
| 13 | Sobic.003G007500 | CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed | - |
| 14 | Sobic.009G011700 | protein kinase APK1A, chloroplast precursor, putative, expressed | K04733: interleukin-1 receptor-associated kinase 4 |
| 15 | Sobic.003G433100 | MAC/Perforin domain containing protein, putative, expressed | - |
| 16 | Sobic.006G088100 | coiled-coil domain-containing protein 55, putative, expressed | K13206: coiled-coil domain-containing protein 55 |
| 17 | Sobic.009G193400 | AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed | K08790: STK38, serine/threonine kinase 38 |
| 18 | Sobic.008G142700 | expressed protein | - |
| 19 | Sobic.001G512900 | heat shock protein DnaJ, putative, expressed | K09537: DnaJ homolog subfamily C member 17 |
| 20 | Sobic.008G180900 | YIF1B, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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