Gene annotation
Transcriptome id Sobic.004G231400.1
Synonym APRL4, Sb04g027510, ATAPRL4
Functional annotation OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed
UniProt C5XYD5
Pfam PF00085
Panther DB PTHR18929 PTHR18929:SF113
NCBI CDD KOG2640; Thioredoxin
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G34780 : APR-like 4
RAP-DB (Rice) LOC_Os02g51850.1 : OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed
MaizeGDB (Corn) Zm00025a022151 , Zm00025a033159
Brachypodium KQK01838
Barley HORVU6Hr1G078130.2 , HORVU6Hr1G078130.1 , HORVU6Hr1G078130.6 , HORVU6Hr1G078130.5
Wheat TraesCS6D02G297700 , TraesCS6B02G348800 , TraesCS6B02G348800 , TraesCS6A02G318500
Populus -


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cDNA sequences
Sobic.004G231400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
2 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
3 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
4 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
5 Sobic.004G274700 SNARE associated Golgi protein, putative, expressed -
6 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
7 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
9 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
10 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
11 Sobic.006G109300 protein binding protein, putative, expressed -
12 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
13 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
14 Sobic.002G262600 protein kinase, putative, expressed K13436: pto-interacting protein 1
15 Sobic.008G142700 expressed protein -
16 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
17 Sobic.004G049100 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
18 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
19 Sobic.001G371300 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
20 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase


Gene co-expression network
sample Sobic004G231400 Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic004G231400--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G231400--Sobic010G071200 Sobic001G478300 Sobic001G478300 Sobic004G231400--Sobic001G478300 Sobic001G149700 Sobic001G149700 Sobic004G231400--Sobic001G149700 Sobic004G274700 Sobic004G274700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic006G257900 Sobic006G257900 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic006G209500 Sobic006G209500 Sobic004G231400--Sobic006G209500 Sobic010G055500--Sobic010G071200 Sobic004G263900 Sobic004G263900 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic001G512900 Sobic001G512900 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic008G142700 Sobic008G142700 Sobic010G055500--Sobic008G142700 Sobic010G055500--Sobic004G150400 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic001G478300--Sobic004G231400 Sobic001G478300--Sobic010G071200 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic001G478300--Sobic010G055500 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic001G478300--Sobic004G274700 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G149700--Sobic001G512900 Sobic004G274700--Sobic001G478300 Sobic004G274700--Sobic004G231400 Sobic001G371300 Sobic001G371300 Sobic004G274700--Sobic001G371300 Sobic004G274700--Sobic003G273100 Sobic004G274700--Sobic001G149700 Sobic004G274700--Sobic006G209500 Sobic004G274700--Sobic010G071200 Sobic004G274700--Sobic006G257900 Sobic003G137400 Sobic003G137400 Sobic004G274700--Sobic003G137400 Sobic001G056200 Sobic001G056200 Sobic006G088100--Sobic001G056200 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G088100--Sobic006G209500 Sobic001G119300 Sobic001G119300 Sobic006G088100--Sobic001G119300 Sobic002G350300 Sobic002G350300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500 Sobic004G119000 Sobic004G119000 Sobic004G150400--Sobic004G119000 Sobic004G150400--Sobic010G055500 Sobic007G205800 Sobic007G205800 Sobic004G150400--Sobic007G205800 Sobic002G272800 Sobic002G272800 Sobic004G150400--Sobic002G272800 Sobic004G150400--Sobic010G071200 Sobic001G028400 Sobic001G028400 Sobic004G150400--Sobic001G028400 Sobic004G150400--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic004G150400--Sobic003G093600 Sobic004G150400--Sobic006G109300 Sobic006G209500--Sobic001G478300 Sobic004G271900 Sobic004G271900 Sobic006G209500--Sobic004G271900 Sobic006G209500--Sobic006G088100 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic009G117400 Sobic009G117400 Sobic006G209500--Sobic009G117400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic006G209500--Sobic007G205800
Octagon: transcription factors


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