Gene annotation
Transcriptome id Sobic.001G371300.1
Synonym RHC1A, Sb01g035310
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WZS7
Pfam PF13639 PF14369
Panther DB PTHR22763 PTHR22763:SF24
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G40830 : RING-H2 finger C1A
RAP-DB (Rice) LOC_Os03g22830.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052373
Brachypodium KQK21677
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G371300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
2 Sobic.002G291300 hydrolase, NUDIX family protein, expressed K18453: ADP-ribose/FAD diphosphatase
3 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
4 Sobic.004G274700 SNARE associated Golgi protein, putative, expressed -
5 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
6 Sobic.004G079100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
7 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
8 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
9 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
10 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
11 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
12 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
13 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
14 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.008G180900 YIF1B, putative, expressed -
18 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
19 Sobic.009G171700 SAG20, putative, expressed -
20 Sobic.003G295400 MAC/Perforin domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G371300 Sobic001G371300 Sobic003G273100 Sobic003G273100 Sobic001G371300--Sobic003G273100 Sobic002G291300 Sobic002G291300 Sobic001G371300--Sobic002G291300 Sobic001G478300 Sobic001G478300 Sobic001G371300--Sobic001G478300 Sobic004G274700 Sobic004G274700 Sobic001G371300--Sobic004G274700 Sobic001G427800 Sobic001G427800 Sobic001G371300--Sobic001G427800 Sobic004G079100 Sobic004G079100 Sobic001G371300--Sobic004G079100 Sobic010G083700 Sobic010G083700 Sobic001G371300--Sobic010G083700 Sobic001G056700 Sobic001G056700 Sobic001G371300--Sobic001G056700 Sobic001G149700 Sobic001G149700 Sobic001G371300--Sobic001G149700 Sobic003G273100--Sobic001G371300 Sobic003G273100--Sobic001G149700 Sobic003G273100--Sobic001G478300 Sobic003G273100--Sobic004G274700 Sobic003G273100--Sobic002G291300 Sobic003G273100--Sobic001G427800 Sobic004G231400 Sobic004G231400 Sobic003G273100--Sobic004G231400 Sobic007G126200 Sobic007G126200 Sobic003G273100--Sobic007G126200 Sobic003G273100--Sobic004G079100 Sobic002G291300--Sobic001G371300 Sobic002G291300--Sobic001G056700 Sobic002G291300--Sobic003G273100 Sobic002G291300--Sobic001G427800 Sobic001G230700 Sobic001G230700 Sobic002G291300--Sobic001G230700 Sobic001G471900 Sobic001G471900 Sobic002G291300--Sobic001G471900 Sobic007G126100 Sobic007G126100 Sobic002G291300--Sobic007G126100 Sobic002G291300--Sobic001G478300 Sobic004G164500 Sobic004G164500 Sobic002G291300--Sobic004G164500 Sobic001G478300--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic001G478300--Sobic004G274700 Sobic004G274700--Sobic001G478300 Sobic004G274700--Sobic004G231400 Sobic004G274700--Sobic001G371300 Sobic004G274700--Sobic003G273100 Sobic004G274700--Sobic001G149700 Sobic004G274700--Sobic006G209500 Sobic004G274700--Sobic010G071200 Sobic006G257900 Sobic006G257900 Sobic004G274700--Sobic006G257900 Sobic003G137400 Sobic003G137400 Sobic004G274700--Sobic003G137400 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G427800--Sobic001G371300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic008G142700 Sobic008G142700 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic004G293700 Sobic004G293700 Sobic004G079100--Sobic004G293700 Sobic001G138300 Sobic001G138300 Sobic004G079100--Sobic001G138300 Sobic001G054200 Sobic001G054200 Sobic004G079100--Sobic001G054200 Sobic004G079100--Sobic010G083700 Sobic003G115800 Sobic003G115800 Sobic004G079100--Sobic003G115800 Sobic007G186300 Sobic007G186300 Sobic004G079100--Sobic007G186300 Sobic009G246950 Sobic009G246950 Sobic004G079100--Sobic009G246950 Sobic009G171700 Sobic009G171700 Sobic004G079100--Sobic009G171700 Sobic004G079100--Sobic001G371300 Sobic006G263900 Sobic006G263900 Sobic010G083700--Sobic006G263900 Sobic010G168600 Sobic010G168600 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic002G256300 Sobic002G256300 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic001G056700--Sobic001G471900 Sobic001G056700--Sobic002G291300 Sobic010G228600 Sobic010G228600 Sobic001G056700--Sobic010G228600 Sobic010G144400 Sobic010G144400 Sobic001G056700--Sobic010G144400 Sobic001G056700--Sobic004G164500 Sobic001G082400 Sobic001G082400 Sobic001G056700--Sobic001G082400 Sobic001G056700--Sobic001G371300 Sobic001G056700--Sobic003G273100 Sobic002G278300 Sobic002G278300 Sobic001G056700--Sobic002G278300 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900
Octagon: transcription factors


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