Gene annotation
Transcriptome id Sobic.002G256300.1
Synonym Sb02g029150
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5X4N8
Pfam PF13639
Panther DB PTHR23041 PTHR23041:SF62
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G48655 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os09g32690.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047559 , Zm00025a014290
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G256300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
2 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
3 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
4 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
5 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
6 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
8 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
9 Sobic.009G171700 SAG20, putative, expressed -
10 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
11 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
12 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.002G352700 expressed protein K08505: protein transport protein SFT1
14 Sobic.010G058900 BSD domain containing protein, expressed -
15 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
16 Sobic.006G225300 expressed protein -
17 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
18 Sobic.004G226800 expressed protein -
19 Sobic.001G054200 green ripe-like, putative, expressed -
20 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -


Gene co-expression network
sample Sobic002G256300 Sobic002G256300 Sobic009G246950 Sobic009G246950 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic001G007200 Sobic001G007200 Sobic009G246950--Sobic001G007200 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic003G007500 Sobic003G007500 Sobic010G083700--Sobic003G007500 Sobic004G104900--Sobic002G256300 Sobic004G104900--Sobic010G083700 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic004G104900--Sobic003G007500 Sobic004G066200 Sobic004G066200 Sobic004G104900--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic004G104900--Sobic009G228700 Sobic004G104900--Sobic001G007200 Sobic004G104900--Sobic009G246950 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic001G136900--Sobic010G083700 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic010G193800--Sobic007G203700 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic010G193800--Sobic009G246950 Sobic003G124800 Sobic003G124800 Sobic001G439600--Sobic003G124800 Sobic001G439600--Sobic002G129000 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G439600--Sobic001G136900 Sobic001G439600--Sobic001G054200 Sobic001G439600--Sobic010G168600 Sobic001G439600--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic001G439600--Sobic001G529000 Sobic006G263900--Sobic010G083700 Sobic006G263900--Sobic001G054200 Sobic006G263900--Sobic010G168600 Sobic001G395400 Sobic001G395400 Sobic006G263900--Sobic001G395400 Sobic006G263900--Sobic001G078500 Sobic006G212100 Sobic006G212100 Sobic006G263900--Sobic006G212100 Sobic006G263900--Sobic010G253800 Sobic006G263900--Sobic009G246950 Sobic006G263900--Sobic003G007500 Sobic009G171700--Sobic001G078500 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic009G171700--Sobic004G293700 Sobic009G171700--Sobic010G083700 Sobic009G171700--Sobic010G253800 Sobic009G171700--Sobic008G180900 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300
Octagon: transcription factors


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