Gene annotation
Transcriptome id Sobic.009G005900.3,Sobic.009G005900.1,Sobic.009G005900.2
Synonym Sb09g000730, ACT7
Functional annotation actin, putative, expressed
UniProt A0A1B6P5M1 , C5YY31
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF200
NCBI CDD -
KEGG Orthology K10355; actin, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09810 : actin 7
RAP-DB (Rice) LOC_Os05g01600.2,LOC_Os05g01600.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a040979 , Zm00025a020451 , Zm00025a040977 , Zm00025a039570 , Zm00025a012921 , Zm00025a038281 , Zm00025a038282 , Zm00025a026721 , Zm00025a037260
Brachypodium PNT73248 , KQJ97425 , KQK06042 , KQK06041 , KQK12272 , KQK10759 , KQK08099
Barley HORVU3Hr1G083380.3 , HORVU3Hr1G083380.6 , HORVU3Hr1G083380.5 , HORVU3Hr1G083380.4 , HORVU1Hr1G074350.1 , HORVU1Hr1G074350.2 , HORVU1Hr1G074350.3 , HORVU5Hr1G117900.5 , HORVU5Hr1G117900.4 , HORVU5Hr1G117900.1 , HORVU5Hr1G117900.3 , HORVU5Hr1G117900.2 , HORVU1Hr1G002840.1 , HORVU1Hr1G002840.3 , HORVU1Hr1G002840.2 , HORVU1Hr1G002840.5 , HORVU1Hr1G002840.4 , HORVU1Hr1G002840.7 , HORVU1Hr1G002840.6
Wheat TraesCS5B02G124100 , TraesCS1B02G283900 , TraesCS1A02G179000 , TraesCS1A02G179000 , TraesCS1A02G020500 , TraesCS1A02G020500 , TraesCS4A02G356100 , TraesCS4A02G356100 , TraesCS1A02G274400 , TraesCS5D02G516200 , TraesCS5A02G124300 , TraesCS5A02G124300 , TraesCS1D02G274400 , TraesCS1D02G020000 , TraesCS5D02G132200 , TraesCS1B02G024500 , TraesCS3D02G370400 , TraesCS3D02G370400 , TraesCS3D02G370400 , TraesCS5B02G516100
Populus PNT13527 , PNT60125 , PNT60124 , PNT60123


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cDNA sequences
Sobic.009G005900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
2 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
3 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
4 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.002G134001 - K14490: histidine-containing phosphotransfer peotein
7 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
8 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
9 Sobic.006G212100 expressed protein -
10 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
11 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
12 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
13 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
14 Sobic.003G261400 DUF292 domain containing protein, expressed -
15 Sobic.009G222500 expressed protein -
16 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
17 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
18 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
19 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
20 Sobic.006G049700 SAM domain family protein, expressed -


Gene co-expression network
sample Sobic009G005900 Sobic009G005900 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic004G321900 Sobic004G321900 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic003G337000 Sobic003G337000 Sobic009G174900--Sobic003G337000 Sobic009G174900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic009G174900--Sobic004G327300 Sobic009G174900--Sobic009G135600 Sobic007G168600 Sobic007G168600 Sobic009G174900--Sobic007G168600 Sobic009G174900--Sobic006G212100 Sobic001G491100 Sobic001G491100 Sobic009G174900--Sobic001G491100 Sobic009G174900--Sobic002G134001 Sobic001G054200 Sobic001G054200 Sobic009G174900--Sobic001G054200 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200 Sobic003G248600 Sobic003G248600 Sobic004G321900--Sobic003G248600 Sobic002G166900 Sobic002G166900 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic004G321900--Sobic009G005900 Sobic009G257600 Sobic009G257600 Sobic004G321900--Sobic009G257600 Sobic004G321900--Sobic007G168600 Sobic001G440700 Sobic001G440700 Sobic004G321900--Sobic001G440700 Sobic001G283200 Sobic001G283200 Sobic004G321900--Sobic001G283200 Sobic003G220600 Sobic003G220600 Sobic004G321900--Sobic003G220600 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic001G433400--Sobic002G400000 Sobic003G367451 Sobic003G367451 Sobic001G433400--Sobic003G367451 Sobic001G433400--Sobic009G146100 Sobic001G433400--Sobic009G135600 Sobic003G253000 Sobic003G253000 Sobic001G433400--Sobic003G253000 Sobic001G433400--Sobic003G220600 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic009G229200 Sobic009G229200 Sobic002G134001--Sobic009G229200 Sobic002G134001--Sobic009G174900 Sobic002G134001--Sobic003G337000 Sobic002G134001--Sobic006G212100 Sobic004G079100 Sobic004G079100 Sobic002G134001--Sobic004G079100 Sobic002G134001--Sobic009G005900 Sobic002G134001--Sobic001G433400 Sobic001G007200 Sobic001G007200 Sobic002G134001--Sobic001G007200 Sobic002G134001--Sobic002G400000 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic002G161800 Sobic002G161800 Sobic003G010400--Sobic002G161800 Sobic008G046500 Sobic008G046500 Sobic003G010400--Sobic008G046500 Sobic003G264200 Sobic003G264200 Sobic003G010400--Sobic003G264200 Sobic010G251000 Sobic010G251000 Sobic003G010400--Sobic010G251000 Sobic007G019800 Sobic007G019800 Sobic003G010400--Sobic007G019800 Sobic003G010400--Sobic009G005900 Sobic010G068500 Sobic010G068500 Sobic003G010400--Sobic010G068500 Sobic001G080700 Sobic001G080700 Sobic003G010400--Sobic001G080700 Sobic001G007000 Sobic001G007000 Sobic003G010400--Sobic001G007000 Sobic006G212100--Sobic001G054200 Sobic006G212100--Sobic009G198500 Sobic001G314500 Sobic001G314500 Sobic006G212100--Sobic001G314500 Sobic006G263900 Sobic006G263900 Sobic006G212100--Sobic006G263900 Sobic006G212100--Sobic002G400000 Sobic006G212100--Sobic007G168600 Sobic006G212100--Sobic009G174900 Sobic010G083700 Sobic010G083700 Sobic006G212100--Sobic010G083700 Sobic001G005900 Sobic001G005900 Sobic006G212100--Sobic001G005900
Octagon: transcription factors


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