Gene annotation
Transcriptome id Sobic.009G257600.1,Sobic.009G257600.2
Synonym Sb09g030730
Functional annotation -
UniProt A0A1B6PAQ6
Pfam PF04851 PF00271 PF00271 PF04851
Panther DB PTHR24031 PTHR24031:SF246 PTHR24031:SF246 PTHR24031
NCBI CDD -
KEGG Orthology K12812; DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0003677DNA binding GO:0005524ATP binding GO:0016787hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G11170 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os01g36890.2 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a036815 , Zm00025a038332
Brachypodium KQK08271 , KQK08265 , KQK08266 , KQK08269
Barley HORVU1Hr1G095100.1 , HORVU1Hr1G095100.2 , HORVU1Hr1G095100.3 , HORVU1Hr1G095100.4 , HORVU1Hr1G095100.5 , HORVU1Hr1G095100.6 , HORVU1Hr1G095100.7
Wheat TraesCS3A02G200100 , TraesCS3A02G200100 , TraesCS1A02G443400 , TraesCS1D02G451300 , TraesCS3B02G224400 , TraesCS3D02G204400 , TraesCS1B02G477500
Populus PNS92361 , PNS92362


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cDNA sequences
Sobic.009G257600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
2 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
3 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
5 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
6 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
7 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
8 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
9 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
10 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
11 Sobic.001G013500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
12 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
13 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
14 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
15 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
16 Sobic.004G348900 expressed protein -
17 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
18 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
19 Sobic.004G181900 expressed protein -
20 Sobic.001G082000 zinc finger family protein, putative, expressed K06874: zinc finger protein


Gene co-expression network
sample Sobic009G257600 Sobic009G257600 Sobic001G283200 Sobic001G283200 Sobic009G257600--Sobic001G283200 Sobic004G321900 Sobic004G321900 Sobic009G257600--Sobic004G321900 Sobic002G166900 Sobic002G166900 Sobic009G257600--Sobic002G166900 Sobic004G310500 Sobic004G310500 Sobic009G257600--Sobic004G310500 Sobic009G005900 Sobic009G005900 Sobic009G257600--Sobic009G005900 Sobic006G252200 Sobic006G252200 Sobic009G257600--Sobic006G252200 Sobic009G067000 Sobic009G067000 Sobic009G257600--Sobic009G067000 Sobic004G082900 Sobic004G082900 Sobic009G257600--Sobic004G082900 Sobic004G216400 Sobic004G216400 Sobic009G257600--Sobic004G216400 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic001G283200--Sobic004G082900 Sobic003G248600 Sobic003G248600 Sobic004G321900--Sobic003G248600 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic004G321900--Sobic009G005900 Sobic004G321900--Sobic009G257600 Sobic007G168600 Sobic007G168600 Sobic004G321900--Sobic007G168600 Sobic001G440700 Sobic001G440700 Sobic004G321900--Sobic001G440700 Sobic004G321900--Sobic001G283200 Sobic003G220600 Sobic003G220600 Sobic004G321900--Sobic003G220600 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic004G194900 Sobic004G194900 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic006G044600 Sobic006G044600 Sobic004G310500--Sobic006G044600 Sobic004G310500--Sobic001G283200 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic001G512300 Sobic001G512300 Sobic004G310500--Sobic001G512300 Sobic002G394600 Sobic002G394600 Sobic004G310500--Sobic002G394600 Sobic009G222500 Sobic009G222500 Sobic004G310500--Sobic009G222500 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic004G224900 Sobic004G224900 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic003G330500 Sobic003G330500 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic009G067000--Sobic007G176200 Sobic009G067000--Sobic006G252200 Sobic009G067000--Sobic001G458700 Sobic001G007600 Sobic001G007600 Sobic009G067000--Sobic001G007600 Sobic009G067000--Sobic002G428200 Sobic009G067000--Sobic001G010700 Sobic007G114200 Sobic007G114200 Sobic009G067000--Sobic007G114200 Sobic009G067000--Sobic004G224900 Sobic009G067000--Sobic001G283200 Sobic004G082900--Sobic006G252200 Sobic004G082900--Sobic001G283200 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic009G149500 Sobic009G149500 Sobic004G082900--Sobic009G149500 Sobic001G444300 Sobic001G444300 Sobic004G082900--Sobic001G444300 Sobic010G262433 Sobic010G262433 Sobic004G216400--Sobic010G262433 Sobic001G468600 Sobic001G468600 Sobic004G216400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic004G216400--Sobic002G341800 Sobic004G216400--Sobic001G283200 Sobic004G216400--Sobic004G310500 Sobic001G021300 Sobic001G021300 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100
Octagon: transcription factors


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