Gene annotation
Transcriptome id Sobic.004G216400.1
Synonym RANGAP2, Sb04g026160
Functional annotation RAN GTPase-activating protein 1, putative, expressed
UniProt C5XXQ0
Pfam PF13943
Panther DB PTHR24106 PTHR24106:SF156
NCBI CDD KOG1909; Ran GTPase-activating protein
KEGG Orthology K14319; Ran GTPase-activating protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63130 : RAN GTPase activating protein 1
RAP-DB (Rice) LOC_Os05g46560.1 : RAN GTPase-activating protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a021140 , Zm00025a031985 , Zm00025a024221
Brachypodium PNT66669 , KQJ98352 , KQJ98353
Barley HORVU1Hr1G063300.5 , HORVU3Hr1G090080.4 , HORVU3Hr1G090080.1 , HORVU3Hr1G090080.2 , HORVU3Hr1G090080.3 , HORVU1Hr1G063300.2 , HORVU1Hr1G063300.1 , HORVU1Hr1G063300.4 , HORVU1Hr1G063300.3
Wheat TraesCS3A02G400100
Populus PNT47943 , PNT37844 , PNT47942 , PNT47944


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G262433 - -
2 Sobic.001G468600 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
3 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
4 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
5 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
6 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
7 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
8 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
9 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41
10 Sobic.001G021400 elongation factor, putative, expressed K03234: elongation factor 2
11 Sobic.003G239800 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
12 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
13 Sobic.002G393500 expressed protein -
14 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
15 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
16 Sobic.002G332900 RNA recognition motif containing protein, putative, expressed -
17 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
18 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
19 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase
20 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1


Gene co-expression network
sample Sobic004G216400 Sobic004G216400 Sobic010G262433 Sobic010G262433 Sobic004G216400--Sobic010G262433 Sobic001G468600 Sobic001G468600 Sobic004G216400--Sobic001G468600 Sobic002G341800 Sobic002G341800 Sobic004G216400--Sobic002G341800 Sobic001G283200 Sobic001G283200 Sobic004G216400--Sobic001G283200 Sobic004G310500 Sobic004G310500 Sobic004G216400--Sobic004G310500 Sobic001G021300 Sobic001G021300 Sobic004G216400--Sobic001G021300 Sobic009G190300 Sobic009G190300 Sobic004G216400--Sobic009G190300 Sobic002G071000 Sobic002G071000 Sobic004G216400--Sobic002G071000 Sobic001G082100 Sobic001G082100 Sobic004G216400--Sobic001G082100 Sobic010G262433--Sobic004G216400 Sobic010G262433--Sobic001G468600 Sobic010G262433--Sobic002G071000 Sobic001G021400 Sobic001G021400 Sobic010G262433--Sobic001G021400 Sobic009G257600 Sobic009G257600 Sobic010G262433--Sobic009G257600 Sobic006G002201 Sobic006G002201 Sobic010G262433--Sobic006G002201 Sobic010G262433--Sobic004G310500 Sobic002G332900 Sobic002G332900 Sobic010G262433--Sobic002G332900 Sobic001G219300 Sobic001G219300 Sobic010G262433--Sobic001G219300 Sobic001G434200 Sobic001G434200 Sobic001G468600--Sobic001G434200 Sobic001G468600--Sobic006G002201 Sobic001G468600--Sobic004G216400 Sobic001G468600--Sobic002G332900 Sobic004G124100 Sobic004G124100 Sobic001G468600--Sobic004G124100 Sobic001G468600--Sobic010G262433 Sobic009G072000 Sobic009G072000 Sobic001G468600--Sobic009G072000 Sobic009G249800 Sobic009G249800 Sobic001G468600--Sobic009G249800 Sobic006G157000 Sobic006G157000 Sobic001G468600--Sobic006G157000 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic004G194900 Sobic004G194900 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic004G310500--Sobic006G044600 Sobic004G310500--Sobic001G283200 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic001G512300 Sobic001G512300 Sobic004G310500--Sobic001G512300 Sobic004G310500--Sobic002G394600 Sobic009G222500 Sobic009G222500 Sobic004G310500--Sobic009G222500 Sobic002G393500 Sobic002G393500 Sobic001G021300--Sobic002G393500 Sobic001G021300--Sobic004G216400 Sobic005G003800 Sobic005G003800 Sobic001G021300--Sobic005G003800 Sobic007G100425 Sobic007G100425 Sobic001G021300--Sobic007G100425 Sobic003G063300 Sobic003G063300 Sobic001G021300--Sobic003G063300 Sobic004G094200 Sobic004G094200 Sobic001G021300--Sobic004G094200 Sobic001G110400 Sobic001G110400 Sobic001G021300--Sobic001G110400 Sobic001G021300--Sobic006G252200 Sobic001G021300--Sobic009G257600 Sobic009G190300--Sobic005G003800 Sobic008G004000 Sobic008G004000 Sobic009G190300--Sobic008G004000 Sobic009G190300--Sobic001G481700 Sobic009G190300--Sobic002G341800 Sobic003G338100 Sobic003G338100 Sobic009G190300--Sobic003G338100 Sobic009G190300--Sobic002G394600 Sobic001G091900 Sobic001G091900 Sobic009G190300--Sobic001G091900 Sobic009G190300--Sobic001G404100 Sobic009G190300--Sobic004G216400 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic001G234200 Sobic001G234200 Sobic002G071000--Sobic001G234200 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic003G178900 Sobic003G178900 Sobic001G082100--Sobic003G178900 Sobic010G057900 Sobic010G057900 Sobic001G082100--Sobic010G057900 Sobic001G114500 Sobic001G114500 Sobic001G082100--Sobic001G114500 Sobic001G082100--Sobic002G341800 Sobic001G082100--Sobic006G044600 Sobic001G082100--Sobic006G049700 Sobic004G356900 Sobic004G356900 Sobic001G082100--Sobic004G356900 Sobic001G082100--Sobic002G394600 Sobic001G082100--Sobic006G010000
Octagon: transcription factors


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