Gene annotation
Transcriptome id Sobic.003G239800.1,Sobic.003G239800.2
Synonym Sb03g029710
Functional annotation expressed protein
UniProt C5XF86
Pfam PF16093
Panther DB PTHR33559
NCBI CDD -
KEGG Orthology K11878; PSMG4, proteasome assembly chaperone 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G48170 : -
RAP-DB (Rice) LOC_Os12g08230.1 : expressed protein
MaizeGDB (Corn) Zm00025a028230 , Zm00025a038690
Brachypodium KQJ91967 , KQJ91968
Barley -
Wheat TraesCS4D02G365200 , TraesCS5A02G324400 , TraesCS5A02G324400 , TraesCS5D02G331300 , TraesCS5B02G325200 , TraesCS5B02G325200
Populus -


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cDNA sequences
Sobic.003G239800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
2 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
3 Sobic.010G205300 secreted salivary protein, putative, expressed -
4 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
5 Sobic.004G232800 expressed protein -
6 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.004G310500 ybaK/prolyl-tRNA synthetase family protein, putative, expressed -
9 Sobic.007G188300 integral membrane family protein, putative, expressed -
10 Sobic.004G194900 expressed protein -
11 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
12 Sobic.002G178601 - -
13 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
14 Sobic.002G393500 expressed protein -
15 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41
16 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
17 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
18 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
19 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
20 Sobic.006G244700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed K00794: ribH, 6,7-dimethyl-8-ribityllumazine synthase


Gene co-expression network
sample Sobic003G239800 Sobic003G239800 Sobic004G356900 Sobic004G356900 Sobic003G239800--Sobic004G356900 Sobic009G004600 Sobic009G004600 Sobic003G239800--Sobic009G004600 Sobic010G205300 Sobic010G205300 Sobic003G239800--Sobic010G205300 Sobic009G228800 Sobic009G228800 Sobic003G239800--Sobic009G228800 Sobic004G232800 Sobic004G232800 Sobic003G239800--Sobic004G232800 Sobic006G280600 Sobic006G280600 Sobic003G239800--Sobic006G280600 Sobic002G341800 Sobic002G341800 Sobic003G239800--Sobic002G341800 Sobic004G310500 Sobic004G310500 Sobic003G239800--Sobic004G310500 Sobic007G188300 Sobic007G188300 Sobic003G239800--Sobic007G188300 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic004G356900--Sobic003G239800 Sobic002G400000 Sobic002G400000 Sobic009G004600--Sobic002G400000 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G198500 Sobic009G198500 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic009G004600--Sobic010G205300 Sobic007G168600 Sobic007G168600 Sobic009G004600--Sobic007G168600 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic001G073000 Sobic001G073000 Sobic009G228800--Sobic001G073000 Sobic004G212200 Sobic004G212200 Sobic009G228800--Sobic004G212200 Sobic007G203700 Sobic007G203700 Sobic009G228800--Sobic007G203700 Sobic003G015900 Sobic003G015900 Sobic009G228800--Sobic003G015900 Sobic010G000900 Sobic010G000900 Sobic009G228800--Sobic010G000900 Sobic003G248600 Sobic003G248600 Sobic009G228800--Sobic003G248600 Sobic001G512300 Sobic001G512300 Sobic009G228800--Sobic001G512300 Sobic009G228800--Sobic004G356900 Sobic002G393500 Sobic002G393500 Sobic009G228800--Sobic002G393500 Sobic004G232800--Sobic010G205300 Sobic004G232800--Sobic004G356900 Sobic004G232800--Sobic009G004600 Sobic006G049700 Sobic006G049700 Sobic004G232800--Sobic006G049700 Sobic009G192000 Sobic009G192000 Sobic004G232800--Sobic009G192000 Sobic010G057900 Sobic010G057900 Sobic004G232800--Sobic010G057900 Sobic004G232800--Sobic003G349300 Sobic004G232800--Sobic004G226800 Sobic004G232800--Sobic002G113900 Sobic005G168600 Sobic005G168600 Sobic006G280600--Sobic005G168600 Sobic006G280600--Sobic004G356900 Sobic006G280600--Sobic001G263000 Sobic001G085100 Sobic001G085100 Sobic006G280600--Sobic001G085100 Sobic006G280600--Sobic004G232800 Sobic006G280600--Sobic003G239800 Sobic006G280600--Sobic007G188300 Sobic001G078800 Sobic001G078800 Sobic006G280600--Sobic001G078800 Sobic009G238850 Sobic009G238850 Sobic006G280600--Sobic009G238850 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic004G310500--Sobic004G194900 Sobic009G075800 Sobic009G075800 Sobic004G310500--Sobic009G075800 Sobic004G310500--Sobic006G044600 Sobic001G283200 Sobic001G283200 Sobic004G310500--Sobic001G283200 Sobic009G257600 Sobic009G257600 Sobic004G310500--Sobic009G257600 Sobic008G156700 Sobic008G156700 Sobic004G310500--Sobic008G156700 Sobic004G310500--Sobic001G512300 Sobic004G310500--Sobic002G394600 Sobic009G222500 Sobic009G222500 Sobic004G310500--Sobic009G222500 Sobic009G149500 Sobic009G149500 Sobic007G188300--Sobic009G149500 Sobic007G188300--Sobic001G085100 Sobic007G188300--Sobic010G205300 Sobic006G244700 Sobic006G244700 Sobic007G188300--Sobic006G244700 Sobic007G188300--Sobic001G263000 Sobic001G014800 Sobic001G014800 Sobic007G188300--Sobic001G014800 Sobic007G014900 Sobic007G014900 Sobic007G188300--Sobic007G014900 Sobic007G188300--Sobic004G356900 Sobic002G209400 Sobic002G209400 Sobic007G188300--Sobic002G209400
Octagon: transcription factors


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