Gene annotation
Transcriptome id Sobic.003G178900.1
Synonym Sb03g023230
Functional annotation RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed
UniProt C5XM90
Pfam PF04032
Panther DB PTHR36072 PTHR36072:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41270 : -
RAP-DB (Rice) LOC_Os01g35990.1 : RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028877
Brachypodium -
Barley HORVU7Hr1G010600.14 , HORVU7Hr1G010600.15 , HORVU7Hr1G010600.16 , HORVU7Hr1G010600.17 , HORVU7Hr1G010600.11 , HORVU7Hr1G010600.12 , HORVU7Hr1G010600.13 , HORVU7Hr1G010600.18 , HORVU7Hr1G010600.19 , HORVU7Hr1G010600.21 , HORVU7Hr1G010600.20 , HORVU7Hr1G010600.23 , HORVU7Hr1G010600.22 , HORVU7Hr1G010600.25 , HORVU7Hr1G010600.24
Wheat TraesCS7D02G053200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
2 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41
3 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
4 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
5 Sobic.010G209000 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
6 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
7 Sobic.004G232800 expressed protein -
8 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
9 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
10 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
11 Sobic.007G184500 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
14 Sobic.004G194900 expressed protein -
15 Sobic.003G239800 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
16 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
17 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
18 Sobic.001G238700 TRM112, putative, expressed -
19 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
20 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2


Gene co-expression network
sample Sobic003G178900 Sobic003G178900 Sobic004G356900 Sobic004G356900 Sobic003G178900--Sobic004G356900 Sobic001G082100 Sobic001G082100 Sobic003G178900--Sobic001G082100 Sobic009G138700 Sobic009G138700 Sobic003G178900--Sobic009G138700 Sobic006G044600 Sobic006G044600 Sobic003G178900--Sobic006G044600 Sobic010G209000 Sobic010G209000 Sobic003G178900--Sobic010G209000 Sobic002G394600 Sobic002G394600 Sobic003G178900--Sobic002G394600 Sobic004G232800 Sobic004G232800 Sobic003G178900--Sobic004G232800 Sobic001G360200 Sobic001G360200 Sobic003G178900--Sobic001G360200 Sobic009G192000 Sobic009G192000 Sobic003G178900--Sobic009G192000 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic001G082100--Sobic003G178900 Sobic010G057900 Sobic010G057900 Sobic001G082100--Sobic010G057900 Sobic001G114500 Sobic001G114500 Sobic001G082100--Sobic001G114500 Sobic002G341800 Sobic002G341800 Sobic001G082100--Sobic002G341800 Sobic001G082100--Sobic006G044600 Sobic006G049700 Sobic006G049700 Sobic001G082100--Sobic006G049700 Sobic001G082100--Sobic004G356900 Sobic001G082100--Sobic002G394600 Sobic006G010000 Sobic006G010000 Sobic001G082100--Sobic006G010000 Sobic007G039400 Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic002G077900 Sobic002G077900 Sobic006G044600--Sobic002G077900 Sobic009G058500 Sobic009G058500 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic007G075900 Sobic007G075900 Sobic010G209000--Sobic007G075900 Sobic010G209000--Sobic006G101700 Sobic008G124900 Sobic008G124900 Sobic010G209000--Sobic008G124900 Sobic001G515100 Sobic001G515100 Sobic010G209000--Sobic001G515100 Sobic006G017000 Sobic006G017000 Sobic010G209000--Sobic006G017000 Sobic010G209000--Sobic007G166400 Sobic008G050800 Sobic008G050800 Sobic010G209000--Sobic008G050800 Sobic010G209000--Sobic001G360200 Sobic001G392300 Sobic001G392300 Sobic010G209000--Sobic001G392300 Sobic002G394600--Sobic002G341800 Sobic002G394600--Sobic006G044600 Sobic002G014400 Sobic002G014400 Sobic002G394600--Sobic002G014400 Sobic001G251600 Sobic001G251600 Sobic002G394600--Sobic001G251600 Sobic009G190300 Sobic009G190300 Sobic002G394600--Sobic009G190300 Sobic002G394600--Sobic004G194900 Sobic001G404100 Sobic001G404100 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic004G310500 Sobic004G310500 Sobic002G394600--Sobic004G310500 Sobic004G232800--Sobic010G205300 Sobic004G232800--Sobic004G356900 Sobic004G232800--Sobic009G004600 Sobic004G232800--Sobic006G049700 Sobic004G232800--Sobic009G192000 Sobic004G232800--Sobic010G057900 Sobic003G349300 Sobic003G349300 Sobic004G232800--Sobic003G349300 Sobic004G232800--Sobic004G226800 Sobic002G113900 Sobic002G113900 Sobic004G232800--Sobic002G113900 Sobic006G278700 Sobic006G278700 Sobic001G360200--Sobic006G278700 Sobic004G066200 Sobic004G066200 Sobic001G360200--Sobic004G066200 Sobic001G360200--Sobic007G184500 Sobic006G252700 Sobic006G252700 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic001G360200--Sobic006G101700 Sobic001G031100 Sobic001G031100 Sobic009G192000--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic009G192000--Sobic007G167900 Sobic010G020400 Sobic010G020400 Sobic009G192000--Sobic010G020400 Sobic009G192000--Sobic003G349300 Sobic001G014800 Sobic001G014800 Sobic009G192000--Sobic001G014800 Sobic003G338500 Sobic003G338500 Sobic009G192000--Sobic003G338500 Sobic006G180000 Sobic006G180000 Sobic009G192000--Sobic006G180000 Sobic009G192000--Sobic010G205300 Sobic003G374000 Sobic003G374000 Sobic009G192000--Sobic003G374000
Octagon: transcription factors


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