Gene annotation
Transcriptome id Sobic.009G138700.1
Synonym Sb09g020450
Functional annotation WD repeat-containing protein 55, putative, expressed
UniProt A0A1B6P8E0
Pfam -
Panther DB PTHR22840
NCBI CDD KOG2444; WD40 repeat protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G34260 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os07g46620.1 : WD repeat-containing protein 55, putative, expressed
MaizeGDB (Corn) Zm00025a044258 , Zm00025a037416
Brachypodium KQK05244
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G138700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
2 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
4 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
5 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
6 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
7 Sobic.006G235700 programmed cell death 2 C-terminal domain-containing protein, putative, expressed K14801: pre-rRNA-processing protein TSR4
8 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
9 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
10 Sobic.004G333800 ribosomal RNA large subunit methyltransferase J, putative, expressed K14864: FTSJ1, tRNA (cytidine32/guanosine34-2'-O)-methyltransferase
11 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
12 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
13 Sobic.001G401500 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
14 Sobic.004G033600 expressed protein -
15 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
16 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
17 Sobic.010G055700 tetratricopeptide repeat domain containing protein, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
18 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
19 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
20 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic009G138700 Sobic009G138700 Sobic007G039400 Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic003G178900 Sobic003G178900 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G143800 Sobic009G143800 Sobic009G138700--Sobic009G143800 Sobic001G291800 Sobic001G291800 Sobic007G039400--Sobic001G291800 Sobic007G039400--Sobic009G138700 Sobic007G039400--Sobic001G259000 Sobic001G145400 Sobic001G145400 Sobic007G039400--Sobic001G145400 Sobic004G340400 Sobic004G340400 Sobic007G039400--Sobic004G340400 Sobic010G007100 Sobic010G007100 Sobic007G039400--Sobic010G007100 Sobic004G353000 Sobic004G353000 Sobic007G039400--Sobic004G353000 Sobic010G176500 Sobic010G176500 Sobic007G039400--Sobic010G176500 Sobic004G033600 Sobic004G033600 Sobic007G039400--Sobic004G033600 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic008G160000--Sobic001G259000 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G259000--Sobic001G145400 Sobic001G259000--Sobic008G160000 Sobic001G259000--Sobic007G039400 Sobic001G259000--Sobic004G340400 Sobic001G259000--Sobic009G138700 Sobic003G382500--Sobic009G138700 Sobic008G098600 Sobic008G098600 Sobic003G382500--Sobic008G098600 Sobic006G084000 Sobic006G084000 Sobic003G382500--Sobic006G084000 Sobic003G407600 Sobic003G407600 Sobic003G382500--Sobic003G407600 Sobic001G017700 Sobic001G017700 Sobic003G382500--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic003G382500--Sobic003G287100 Sobic007G112600 Sobic007G112600 Sobic003G382500--Sobic007G112600 Sobic003G382500--Sobic010G007100 Sobic008G009600 Sobic008G009600 Sobic003G382500--Sobic008G009600 Sobic002G406600--Sobic009G138700 Sobic004G130200 Sobic004G130200 Sobic002G406600--Sobic004G130200 Sobic001G147100 Sobic001G147100 Sobic002G406600--Sobic001G147100 Sobic002G086200 Sobic002G086200 Sobic002G406600--Sobic002G086200 Sobic003G424800 Sobic003G424800 Sobic002G406600--Sobic003G424800 Sobic010G247400 Sobic010G247400 Sobic002G406600--Sobic010G247400 Sobic003G397700 Sobic003G397700 Sobic002G406600--Sobic003G397700 Sobic010G051500 Sobic010G051500 Sobic002G406600--Sobic010G051500 Sobic002G406600--Sobic007G039400 Sobic004G356900 Sobic004G356900 Sobic003G178900--Sobic004G356900 Sobic001G082100 Sobic001G082100 Sobic003G178900--Sobic001G082100 Sobic003G178900--Sobic009G138700 Sobic006G044600 Sobic006G044600 Sobic003G178900--Sobic006G044600 Sobic010G209000 Sobic010G209000 Sobic003G178900--Sobic010G209000 Sobic002G394600 Sobic002G394600 Sobic003G178900--Sobic002G394600 Sobic004G232800 Sobic004G232800 Sobic003G178900--Sobic004G232800 Sobic001G360200 Sobic001G360200 Sobic003G178900--Sobic001G360200 Sobic009G192000 Sobic009G192000 Sobic003G178900--Sobic009G192000 Sobic006G235700--Sobic006G135900 Sobic006G235700--Sobic009G138700 Sobic006G235700--Sobic001G017700 Sobic006G235700--Sobic003G287100 Sobic006G200700 Sobic006G200700 Sobic006G235700--Sobic006G200700 Sobic006G235700--Sobic009G143800 Sobic007G184500 Sobic007G184500 Sobic006G235700--Sobic007G184500 Sobic006G235700--Sobic003G382500 Sobic003G279900 Sobic003G279900 Sobic006G235700--Sobic003G279900 Sobic006G135900--Sobic008G160000 Sobic006G135900--Sobic001G455800 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic006G135900--Sobic009G138700 Sobic006G135900--Sobic007G184500 Sobic009G235000 Sobic009G235000 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic009G143800--Sobic001G291800
Octagon: transcription factors


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